View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_66 (Length: 335)
Name: NF19757_high_66
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_66 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 1581997 - 1582311
Alignment:
| Q |
1 |
atttctcaattaacggtgtagatctgactaatgtatgattctttccnnnnnnnnnnnnctgaattaaaattgttttagtattataatacttgcttaattt |
100 |
Q |
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| T |
1581997 |
atttctcaattaacggtgtagatctgactaatgtatgattctttccttttttttt----tgaattaaaattgttttagtattataatacttgcttaattt |
1582092 |
T |
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| Q |
101 |
gctacaagattagtgaattatgttatttctatcttctgtatgattttcgtccatcgttgcagtactatcatgctgtttgatttaaatcaatattgtttgc |
200 |
Q |
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| T |
1582093 |
gctacaagattagtgaattatgttatttctatcttctgtatgattttcgtccatcgttgcagtactatcatgctgtttgatttaaatcaatattgtttgc |
1582192 |
T |
|
| Q |
201 |
atataacaatctagtaa-nnnnnnnatgtaaatttgagaataaaccatcaatttagtccataaactgttataaacagtccttaaaatatatgaaatcagt |
299 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1582193 |
atataacaatctagtaattttttttatgtaaatttgagaataaaccatcaatttagtccataaactgttataaacagtccttaaaatatatgaaatcagt |
1582292 |
T |
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| Q |
300 |
caatttagtttacaaagta |
318 |
Q |
| |
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||||||||||||||||||| |
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| T |
1582293 |
caatttagtttacaaagta |
1582311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 31811197 - 31811225
Alignment:
| Q |
237 |
gaataaaccatcaatttagtccataaact |
265 |
Q |
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| T |
31811197 |
gaataaaccatcaatttagtccataaact |
31811225 |
T |
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