View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19757_high_7 (Length: 701)
Name: NF19757_high_7
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 686
Target Start/End: Original strand, 38220107 - 38220792
Alignment:
| Q |
1 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220107 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
38220206 |
T |
|
| Q |
101 |
acaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaacaaactacaaattt |
200 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220207 |
acaaagaaa-tccatattgctttactatataatacccaacattggattagtgttacatttcagagttaaatcgagattgagacaaacaaactacaaattt |
38220305 |
T |
|
| Q |
201 |
ggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcggacggtcctagatttcaagctaggtattttggatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
38220306 |
ggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcggacggtcctagatttcaatctaggtattttggattt |
38220405 |
T |
|
| Q |
301 |
taatnnnnnnnnnnnnn-tcaaaatttgtatattttgtgaaccgactgatcttgatctaacttttattgtgcatcgactgcgtgtttcttgatgaatttg |
399 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220406 |
taataaaaaaaaaaaaaatcaaaatttgtatattttgtgaactgactgatcttgatctaacatttattgtgcatcgactgcgtgtttcttgatgaatttg |
38220505 |
T |
|
| Q |
400 |
tttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataa |
499 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38220506 |
tttaccttgcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtaacatcaagtatatatatcttagcaggcactataa |
38220605 |
T |
|
| Q |
500 |
aatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataaca |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38220606 |
aatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggacgctcaaaaccttccttcaacttgcactgtttagagtcataaca |
38220705 |
T |
|
| Q |
600 |
acataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagt |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220706 |
acataagaaacctcctttataatctgaccttattgaccttccatattcatcaactgtaacattataaagctcacacttgcactcagt |
38220792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 687
Target Start/End: Original strand, 38242962 - 38243641
Alignment:
| Q |
1 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||| |||||| |||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
38242962 |
ccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttgatactcaatctgaa |
38243061 |
T |
|
| Q |
101 |
acaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaacaaactacaaattt |
200 |
Q |
| |
|
|||| ||| ||||| ||||| | ||| |||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
38243062 |
acaaagaaa-tccatgttgct---cactatgatacccaacaatgggctagtgttacatttaagagttaaatcgagattgagacaaataaattactaattt |
38243157 |
T |
|
| Q |
201 |
ggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaa-gatcggacggtcctagatttcaagctaggtattttggatg |
299 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||| || |||||||||| ||| |||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
38243158 |
ggattcctagcagccgagagactctacattcacgcaatcagcacagactgttggaccaaagatcagaaggtcctagatttcaagctcggtattttggatt |
38243257 |
T |
|
| Q |
300 |
ttaatnnnnnnnnnnnnntcaaaatttgtatattttgtgaaccgactgatcttgatctaacttttattg-tgcatcgactgcgtgtttcttgatgaattt |
398 |
Q |
| |
|
||||| |||| ||| ||||||||||||||| ||||| |||||||| ||| || |||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
38243258 |
ttaatcaaaataa-----tcaatattcgtatattttgtgaactgactggtcttgatccaacattcattgatgcattgactgtgtgtttcttgatgaattc |
38243352 |
T |
|
| Q |
399 |
gtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactata |
498 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||| ||||||||| |||||| | |||| || ||||||| || |||||||||| |||||||||| |
|
|
| T |
38243353 |
atttaccttgcaatcatgatcaaagttcgttccttttgagttatctgattgtttcatactatcggtaacatcaattacatatatcttaagaggcactata |
38243452 |
T |
|
| Q |
499 |
aaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataac |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | ||||||| |
|
|
| T |
38243453 |
aaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaaccttccttcaacttgcactgtgtacaatcataac |
38243552 |
T |
|
| Q |
599 |
aacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtg |
687 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
38243553 |
aacataaccaacctcctttataatctggccttatagaccttccatattcatccaccgtaacattataaagctcgcacttacactcagtg |
38243641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 400 - 687
Target Start/End: Original strand, 38238416 - 38238703
Alignment:
| Q |
400 |
tttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataa |
499 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
38238416 |
tttaccttgcagtcatgatctgagttcattccttttgaattatctgatagtttcaaagtatcagtaacatcaagtatatatatcttaacaggcactataa |
38238515 |
T |
|
| Q |
500 |
aatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataaca |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
38238516 |
aatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaaccttccttcaacttgcactgtttagaatcataaca |
38238615 |
T |
|
| Q |
600 |
acataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtg |
687 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38238616 |
acataacaaacctcctttataatctggcctaatagaccttccatattcatccactgtaacattataaagctcacacttacactcagtg |
38238703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 382 - 687
Target Start/End: Original strand, 38226869 - 38227174
Alignment:
| Q |
382 |
tgtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatata |
481 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||| | |||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
38226869 |
tgtttcttaatgaattcatttaccttgcaatcatggtttgagttcaatccttttgaatcatctgatggtttcaaagtatcagtaacatcaagtatatata |
38226968 |
T |
|
| Q |
482 |
tcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgca |
581 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38226969 |
tcttaacaggcactataaaatcatcccaatcaacccattttacagtgtatcttaggtagagacttctctttggaccctcaaaaccttccttcaacttgca |
38227068 |
T |
|
| Q |
582 |
ctgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcac |
681 |
Q |
| |
|
||| || ||||||||||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
38227069 |
ttgtgtatggtcataacaacataacaaacctcctttataatctggcccaatagaccttccatattcatccactgtaacattataaaggtcgcacttgcac |
38227168 |
T |
|
| Q |
682 |
tcagtg |
687 |
Q |
| |
|
|||||| |
|
|
| T |
38227169 |
tcagtg |
38227174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 383 - 683
Target Start/End: Original strand, 38214447 - 38214747
Alignment:
| Q |
383 |
gtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatat |
482 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| || ||||||| ||||||||||| ||||||| |||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
38214447 |
gtttcttgatgaattcatttaccttgcaatcatgatccgagttcaatccttttgaatcatctgatggtttcaaactatcagtaacatcaattatatatat |
38214546 |
T |
|
| Q |
483 |
cttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcac |
582 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| || ||| |
|
|
| T |
38214547 |
cttcacaggcacaataaaatcatcccaatcgacccattttacagtgtatcttagatagagacttctctttggcccctcaaaaccttccttcaatttacac |
38214646 |
T |
|
| Q |
583 |
tgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcact |
682 |
Q |
| |
|
||| || | |||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38214647 |
tgtgtataatcataacaacataacaaacctccttcataatctgacctaatagaccttccatattcatccactgtaacattataaagctcacacttacact |
38214746 |
T |
|
| Q |
683 |
c |
683 |
Q |
| |
|
| |
|
|
| T |
38214747 |
c |
38214747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 382 - 683
Target Start/End: Original strand, 38253599 - 38253900
Alignment:
| Q |
382 |
tgtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatata |
481 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||| |||||||||| | ||||||||| ||||||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
38253599 |
tgtttcttaatgaatttacttaccttgcaatcatggtctgagttcaattcttttgaatcatctgatggtttcaaagtatcagtaacatcaattatatata |
38253698 |
T |
|
| Q |
482 |
tcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgca |
581 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38253699 |
tcttaacaggcactataaaatcatcccaatcaacccatttcactgtgtatcttaagtagaggtttctctttggaccctcaaaaccttccttcaacttgca |
38253798 |
T |
|
| Q |
582 |
ctgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcac |
681 |
Q |
| |
|
| || || |||||||||||||| | ||||||||||||||| | ||||| |||||||| || |||||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
38253799 |
ccgtgtatgatcataacaacataacatacctcctttataatcaggccttacagaccttccgtactcatccaccgtaacattataaagctcgcacttacac |
38253898 |
T |
|
| Q |
682 |
tc |
683 |
Q |
| |
|
|| |
|
|
| T |
38253899 |
tc |
38253900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 382 - 687
Target Start/End: Original strand, 38248484 - 38248789
Alignment:
| Q |
382 |
tgtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatata |
481 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
38248484 |
tgtttcttgatgaatgcatttaccttgcaatcatgatctgatttcattccttttgaatcatctgatagtttcaaactaccagtgacatcaattatatata |
38248583 |
T |
|
| Q |
482 |
tcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgca |
581 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||| || || ||| |||||||||| ||||||||||| || || || ||| |||||||||||||||| |
|
|
| T |
38248584 |
tcttaacgggcactataaaatcatcccaatcaacccactttactgtgcatcttaagtaaaggcttctcttaggtccttcgaaaccttccttcaacttgca |
38248683 |
T |
|
| Q |
582 |
ctgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcac |
681 |
Q |
| |
|
| || |||| |||||||||||||| ||||||||||||||||||| ||| || || ||||||| ||||||||||||||||||||||| |||||||| || |
|
|
| T |
38248684 |
ccgtgtagaatcataacaacataacaaacctcctttataatctggcctaatagattttccatactcatccactgtaacattataaaggtcacacttacat |
38248783 |
T |
|
| Q |
682 |
tcagtg |
687 |
Q |
| |
|
|||||| |
|
|
| T |
38248784 |
tcagtg |
38248789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 38237987 - 38238090
Alignment:
| Q |
1 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||| |||| |||||||||||||||||| ||||| |
|
|
| T |
38237987 |
ccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttgatactcattctgaa |
38238086 |
T |
|
| Q |
101 |
acaa |
104 |
Q |
| |
|
|||| |
|
|
| T |
38238087 |
acaa |
38238090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 38214069 - 38214187
Alignment:
| Q |
1 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
100 |
Q |
| |
|
||||||||||| | |||||||||| ||||| ||||||||||||||||||||| ||||| | |||||| || ||||||||||||||||||||||||| |
|
|
| T |
38214069 |
ccaccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaacttgatactcaacctgaa |
38214168 |
T |
|
| Q |
101 |
acaattaaaatccatattgct |
121 |
Q |
| |
|
|||| ||||||||| ||||| |
|
|
| T |
38214169 |
acaa--aaaatccatgttgct |
38214187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 38226448 - 38226556
Alignment:
| Q |
1 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
100 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||| |||||||||||||| || ||||||| |||| ||| |||||||||||||||||| ||||| |
|
|
| T |
38226448 |
ccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaa |
38226547 |
T |
|
| Q |
101 |
acaattaaa |
109 |
Q |
| |
|
|||| |||| |
|
|
| T |
38226548 |
acaaataaa |
38226556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 38248176 - 38248264
Alignment:
| Q |
15 |
tgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa |
104 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||||||| |||| || | |||| |||| |||||||| |||||||||||||||||||| |
|
|
| T |
38248176 |
tgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaac-tgatactcaacctgaaacaa |
38248264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 38253315 - 38253418
Alignment:
| Q |
1 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
100 |
Q |
| |
|
||||| ||||| | |||||||||| |||| || ||||||||||| |||||||| ||||| || | | || |||| |||| ||||| |||||||||||||| |
|
|
| T |
38253315 |
ccaccggtttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgcaagatttaacttcatactcaacctgaa |
38253414 |
T |
|
| Q |
101 |
acaa |
104 |
Q |
| |
|
|||| |
|
|
| T |
38253415 |
acaa |
38253418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 6e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 400 - 687
Target Start/End: Original strand, 17455117 - 17455404
Alignment:
| Q |
400 |
tttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataa |
499 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||| ||| ||||| ||| ||||||| |
|
|
| T |
17455117 |
tttaccttacaatcatgatctgagttcattccttttgaatcatctgatagtttcaaactatcagtaacatcaattatgtatgtcttaagaggaactataa |
17455216 |
T |
|
| Q |
500 |
aatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataaca |
599 |
Q |
| |
|
| |||||||||||||||||||| | ||||| | | || || ||||||||||| |||| |||| |||||||||||||||| ||| || |||||||| |
|
|
| T |
17455217 |
attcatcccaatcaacccatttgattttgtatttcagataaagacttctctttggtcccttaaaaccttccttcaacttgcattgtgtattatcataaca |
17455316 |
T |
|
| Q |
600 |
acataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtg |
687 |
Q |
| |
|
|||| | ||||||||||||||||| ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17455317 |
acatgacaaacctcctttataatcagacattaaaggccttccatattcatccactgtaacattataaagctcacacttgcactcagtg |
17455404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 385 - 687
Target Start/End: Original strand, 17434002 - 17434304
Alignment:
| Q |
385 |
ttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatct |
484 |
Q |
| |
|
||||||||||| | |||||||| |||||||| ||||||||| |||||||||||| || ||||||||| ||| ||||||| ||||||| ||| ||| || |
|
|
| T |
17434002 |
ttcttgatgaaatcatttaccttacaatcatgatctgagttcgttccttttgaatcatttgatagttttaaactatcagtaacatcaattatgtatgcct |
17434101 |
T |
|
| Q |
485 |
tagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactg |
584 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||| | ||||| | | ||||| ||||||||||| ||||||||| || ||||||||||||| || |
|
|
| T |
17434102 |
taacaggcactataaaatcatcccaatcaatccatttgattttgtatttcagatagagacttctctttggtccctcaaaacctaccttcaacttgcattg |
17434201 |
T |
|
| Q |
585 |
tttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactca |
684 |
Q |
| |
|
| || |||| ||||||| | ||| |||||||||||| | |||| | |||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
17434202 |
tgtattatcatgacaacatttcataccccctttataatctaaacttaaaggtcttccatattcatccactgttacattataaagctcacacttgcattca |
17434301 |
T |
|
| Q |
685 |
gtg |
687 |
Q |
| |
|
||| |
|
|
| T |
17434302 |
gtg |
17434304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 17454544 - 17454647
Alignment:
| Q |
1 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
100 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||||||||||||||||||| |||| ||||| |||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
17454544 |
ccaccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaacttgatactcaatctgaa |
17454643 |
T |
|
| Q |
101 |
acaa |
104 |
Q |
| |
|
|||| |
|
|
| T |
17454644 |
acaa |
17454647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 17433465 - 17433568
Alignment:
| Q |
1 |
ccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaa |
100 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||||||||||||||||||| | |||| ||||| | || |||| ||||||||||||||||||| ||||| |
|
|
| T |
17433465 |
ccaccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaacttgatactcaatctgaa |
17433564 |
T |
|
| Q |
101 |
acaa |
104 |
Q |
| |
|
|||| |
|
|
| T |
17433565 |
acaa |
17433568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 21547063 - 21547011
Alignment:
| Q |
427 |
attccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatata |
479 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
21547063 |
attcctttagacttatctgatagcttcaaagtatcagtcacatcaaatatata |
21547011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 491
Target Start/End: Complemental strand, 11479357 - 11479291
Alignment:
| Q |
425 |
tcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcagg |
491 |
Q |
| |
|
|||||||||| || |||||||| | |||||||||||||| ||||||| |||||| |||||| |||| |
|
|
| T |
11479357 |
tcattcctttggacttatctgaaatcttcaaagtatcagtcacatcaaatatataaatcttaacagg |
11479291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 451 - 531
Target Start/End: Complemental strand, 11485600 - 11485520
Alignment:
| Q |
451 |
ttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtat |
531 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||||| |||||| ||||| | ||||||| |||||| ||||| |||||| |
|
|
| T |
11485600 |
ttcaaagtatcagtcacatcaaatatataaatcttgagaggcaccataaacttttcccaattaacccacttaacggtgtat |
11485520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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