View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_75 (Length: 316)
Name: NF19757_high_75
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 39508105 - 39507819
Alignment:
| Q |
13 |
atacttgagaggagttagttttgannnnnnnncttcgaaaagtcggtatttagcttaaagaccgactaatccggaggaccaatcccaccatccattaggg |
112 |
Q |
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| T |
39508105 |
atacttgagaggagttagttttgattttttttcttcaaaaaatcggtatttagcttaaagaccgactaatttggaggaccaatcccaccatccattaggg |
39508006 |
T |
|
| Q |
113 |
gggacgcaattgaagtcaagacaaaaccttgtataaaccgacacaacataagaattgttagtatcaatcgaatgtaagacatagagtggagcacactccg |
212 |
Q |
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|||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39508005 |
gggacgtaattgaagtcaagacaaaaccttatatagaccgacacaacataagaattgttagtatcaatcgaatgtaagacatagagtggagcacactccg |
39507906 |
T |
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| Q |
213 |
aatttaatgtaaggaaaatagaatcttgtaaaattttcatctaagccaggccctcaattttcttgaactagctaagatatcaaacac |
299 |
Q |
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| T |
39507905 |
aatttaaagtaaggaaaatagaatcttgtaaaattttcatctaagccaggccctcaattttcttgaactagctaagatatcaaacac |
39507819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 37056571 - 37056528
Alignment:
| Q |
72 |
gaccgactaatccggaggaccaatcccaccatccattagggggg |
115 |
Q |
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| T |
37056571 |
gaccgactaatccggaggaccaatcccaccgtccactagcgggg |
37056528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 28409245 - 28409303
Alignment:
| Q |
69 |
aaagaccgactaatccggaggaccaatcccaccatccattaggggggacgcaattgaag |
127 |
Q |
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| T |
28409245 |
aaagaccgactaattcgggggaccaatcccaccgtccactagtgggggcccaattgaag |
28409303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 43504783 - 43504749
Alignment:
| Q |
72 |
gaccgactaatccggaggaccaatcccaccatcca |
106 |
Q |
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| T |
43504783 |
gaccgactaatccgggggaccaatcccaccatcca |
43504749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 37565336 - 37565284
Alignment:
| Q |
119 |
caattgaagtcaagacaaaaccttgtataaaccgacacaacataagaattgtt |
171 |
Q |
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| T |
37565336 |
caattgaagtcggaacaaaaccttgtattaaccgacccaacatatgaattgtt |
37565284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 28090674 - 28090642
Alignment:
| Q |
72 |
gaccgactaatccggaggaccaatcccaccatc |
104 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
28090674 |
gaccgactaatccgggggaccaatcccaccatc |
28090642 |
T |
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