View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_79 (Length: 305)
Name: NF19757_high_79
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_79 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 12519009 - 12518723
Alignment:
| Q |
1 |
gttgagcatggtagtgaatgactcgccaccattggcaatgttcttgtgaacaacaacactagtgtaccaaacaagtaaagcccaagatagaaacagaaca |
100 |
Q |
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| T |
12519009 |
gttgagcatggtagtgaatgactcgccaccattggcaatgttcttgtgaacaacaacactagtgtaccaaacaagtaaagcccaagatagaaacagaaca |
12518910 |
T |
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| Q |
101 |
caatgcattgagccaagtccaagaccctttgccaatcctgcttttctaccgtttacgtaagttttcataagagctgctttatatgatcttactgctcttt |
200 |
Q |
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| T |
12518909 |
caatgcattgagccaagtccaagaccctttgctaatcctgcttttctaccgtttacgtaagttttcataagagctgctttatatgatcttactgctcttt |
12518810 |
T |
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| Q |
201 |
cttctcctgcaaatgcttgaactgttctgacattgcctatgacctgaaacacacaaacaaaacaatgtcaagaaagtgtgagatgct |
287 |
Q |
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| T |
12518809 |
cttctcctgcaaatgcttgaactgttctgacattgcctatgacctgaaacacacaaacaaaacaatgtcaagaaagtgtgagatgct |
12518723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 27722119 - 27721876
Alignment:
| Q |
2 |
ttgagcatggtagtgaatgactcgccaccattggcaatgttcttgtgaacaacaacactagtgtaccaaacaagtaaagcccaagatagaaacagaacac |
101 |
Q |
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||||||||||| | ||| | || ||||||||||| |||||||||||||||| || ||| ||| |||||||||| | |||||| |||||||| ||||||| |
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| T |
27722119 |
ttgagcatggttgcgaaagcctttccaccattggcgatgttcttgtgaacaataatactggtgaaccaaacaagcagagcccatgatagaaaaagaacac |
27722020 |
T |
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| Q |
102 |
aatgcattgagccaagtccaagaccctttgccaatcctgcttttctaccgtttacgtaagttttcataagagctgctttatatgatcttactgctctttc |
201 |
Q |
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||||||| ||||| ||||| ||||||||||| || || ||||||| ||| || || || ||| | ||||| |||| |||||| | |||||||||| |
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| T |
27722019 |
aatgcatagagcctagtcctagaccctttgctaaaccggcttttcgaccattcttatatgtgttccttagagccactttgtatgatatcactgctctttg |
27721920 |
T |
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| Q |
202 |
ttctcctgcaaatgcttgaactgttctgacattgcctatgacct |
245 |
Q |
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||||||| |||||||||| || |||| ||||| ||||| |||| |
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| T |
27721919 |
ttctcctccaaatgcttgtacagttcgaacatttcctatcacct |
27721876 |
T |
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