View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_9 (Length: 623)
Name: NF19757_high_9
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 317
Target Start/End: Original strand, 56280929 - 56281242
Alignment:
| Q |
4 |
agagagatgaaaaggagtgctcaaatgctaatgataatcatgctgttgtgtttatttttcatttcatctacatgcaatcaaatgcaggtattatttatgt |
103 |
Q |
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| T |
56280929 |
agagaaatgaaaaggagtgctcaaatgctaatgataatcatgctgttgtgtttatttttcatttcatctacatgcaatcaaatgcaggtattatttatgt |
56281028 |
T |
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| Q |
104 |
aacatgttctgggtcctgttggatattgaatatgatattctaaaaacaaattgctttgataatagtagtattatattactggtaagacttagtagctgaa |
203 |
Q |
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| T |
56281029 |
aacatgttctgggtcctgttggatattgaatatgatattctaaaaacaaattgctttgataatagtagtattatattactggtaagacttagtagctgaa |
56281128 |
T |
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| Q |
204 |
attgacgatggnnnnnnnngatatgctaattttttaggacatgacatgccaaatgaaagtgtgagcattggaggaatttcttggtgttgtagtgtattgg |
303 |
Q |
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| T |
56281129 |
attgacgatggtttttttttatatgctaattttttaggacatgacatgccaaatgaaagtgtgagcattggaggaatttcttggtgttgtagtgtattgg |
56281228 |
T |
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| Q |
304 |
tttgtcattttaat |
317 |
Q |
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|||||||||||||| |
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| T |
56281229 |
tttgtcattttaat |
56281242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 315 - 607
Target Start/End: Original strand, 56281283 - 56281575
Alignment:
| Q |
315 |
aatcaagggcttggctccgcctttaaataannnnnnnnnnnnncatataccatacttgaattatccccttctttattttcttgctcaagattcaaagcgt |
414 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56281283 |
aatcaagggcttggctccgcctttaaataatttttctttttttcatataccatacttgaattatccccttctttattttcttgctcaagattcaaagcgt |
56281382 |
T |
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| Q |
415 |
ttgataccatgagaaattgaaagagacaccaaagactttcagcttcattgtattgcaatgctaatattggcatttggctcaaatgattcatttcgttcta |
514 |
Q |
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| T |
56281383 |
ttgataccatgagaaattgaaagagacaccaaagactttcagcttcattgtattgcaatgctaatattggcatttggctcaaatgattcatttcgttcta |
56281482 |
T |
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| Q |
515 |
tttattacctataatctatgatagtaagcaaataatatatcacattaatttgagagtgcttggttacactgatcctttctgactcctgcaact |
607 |
Q |
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| T |
56281483 |
tttattacctataatctatgatagtaagcaaataatatatcacattaatttgagagtgcttggttacactgatcctttctgactcctgcaact |
56281575 |
T |
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