View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19757_high_95 (Length: 257)
Name: NF19757_high_95
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_95 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 14667116 - 14666979
Alignment:
| Q |
120 |
tttgtagggacgaaaatcgtgtttgttcgtaaaagatatatgtaatgttacatatacattacctgagtcttgctggcttctttggccaaagatttgagtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14667116 |
tttgtagggacgaaaatcgtgtttgttcgtaaaagatatatgtaatgttacatatacattacctgagtcttgctggcttctttggccaaagatttgagtt |
14667017 |
T |
|
| Q |
220 |
ccgaatatagtgaggttcaattcctaaggcaaacatgt |
257 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14667016 |
cctaatatagtgaggttcaattcctaaggcaaacatgt |
14666979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 14667171 - 14667113
Alignment:
| Q |
12 |
gaaaatattaggcaaaatacatgttgcggacctatagattgcttaattataccagtttg |
70 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14667171 |
gaaaatattaggcaaaatacatcttgcggacctatagattgcttaattataccagtttg |
14667113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University