View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_96 (Length: 253)
Name: NF19757_high_96
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_96 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 28209582 - 28209347
Alignment:
| Q |
1 |
ctccagcctaatgaggcatggaaaaaagtttttgggccaacttttgtctatcttaacaacttgttggatcatgatgaggacccactagctcaactctggg |
100 |
Q |
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| T |
28209582 |
ctccagcctaatgagccatggaaaaaagtttttgggccaacttttgtctatcttaacaacttgttggatcatgatgaggacccactagctcaactctggg |
28209483 |
T |
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| Q |
101 |
aggacgccaaatttcaggttcagaattaaaaaatctagaaaatttagtttaatttaagaacataaacactaattaaatactaattaagaccacttaaaat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28209482 |
aggacgccaaatttcaggttcagaatta-aaaatctagaaaatttagtttaatttaagaacataaacactaattaaatactaattaagaccacttaaaat |
28209384 |
T |
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| Q |
201 |
ggcttctagatgaacaaagaagtacaaagttggccct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
28209383 |
ggcttctagatgaacaaagaagtacaaagttggccct |
28209347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 52629283 - 52629361
Alignment:
| Q |
159 |
aacataaacactaattaaatactaattaagaccacttaaaatggcttctagatgaacaaagaagtacaaagttggccct |
237 |
Q |
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|||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||| |||||| |||||| |
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| T |
52629283 |
aacataaacactaattaagtactaactaagaccatttaaaatggcttctagatgaacatggaagtgcaaagtaggccct |
52629361 |
T |
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