View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_98 (Length: 249)
Name: NF19757_high_98
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_98 |
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| [»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 8629523 - 8629423
Alignment:
| Q |
132 |
tatgaagggatatttggcattctcaatctcaattttcaagacaatatcttgatttcctctggcacttcctcaactaccccaacctcgttgttaaagattc |
231 |
Q |
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| T |
8629523 |
tatgaagggatatttggcattttcaatctcaattttcaagacaatatcttgatttcctctagcacttcctcaactaccccaacctcgttgttaaagattc |
8629424 |
T |
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| Q |
232 |
t |
232 |
Q |
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| T |
8629423 |
t |
8629423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 8630511 - 8630389
Alignment:
| Q |
11 |
aaaatatgttgatgttctttgacaaggtcatcaagttcttcaaagtataaattattnnnnnnnnngttcttcaaagtataacaaaatatttaaattttga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8630511 |
aaaatatgttgatgttctttgacaaggtcatcaagttcttcaaagtataaattatt-aaaaaaaagttcttcaaagtataacaaaatatttaaattttga |
8630413 |
T |
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| Q |
111 |
aaaataaatgagcttttgttttat |
134 |
Q |
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| T |
8630412 |
aaaataaatgagcttttattttat |
8630389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 8647161 - 8647120
Alignment:
| Q |
76 |
gttcttcaaagtataacaaaatatttaaattttgaaaaataa |
117 |
Q |
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| T |
8647161 |
gttcttcaaattataacaaaatatttaaatcttgaaaaataa |
8647120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 8647191 - 8647146
Alignment:
| Q |
15 |
tatgttgatgttctttgacaaggtcatcaagttcttcaaagtataa |
60 |
Q |
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| T |
8647191 |
tatgttgatgttcttcaacaaggtaatcaagttcttcaaattataa |
8647146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 34681 - 34730
Alignment:
| Q |
11 |
aaaatatgttgatgttctttgacaaggtcatcaagttcttcaaagtataa |
60 |
Q |
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|||||||||||||| |||| |||||||| ||||||||||||||| ||||| |
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| T |
34681 |
aaaatatgttgatgatcttcgacaaggtgatcaagttcttcaaattataa |
34730 |
T |
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