View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19757_high_99 (Length: 247)

Name: NF19757_high_99
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19757_high_99
NF19757_high_99
[»] chr5 (4 HSPs)
chr5 (3-227)||(39191872-39192096)
chr5 (188-233)||(22937383-22937428)
chr5 (191-239)||(21333121-21333169)
chr5 (191-239)||(21336137-21336185)
[»] scaffold0080 (1 HSPs)
scaffold0080 (74-240)||(26706-26872)
[»] chr8 (9 HSPs)
chr8 (171-233)||(25595103-25595165)
chr8 (171-233)||(18721727-18721789)
chr8 (176-233)||(25591919-25591976)
chr8 (176-233)||(23613157-23613214)
chr8 (171-233)||(18696386-18696448)
chr8 (171-240)||(31984593-31984662)
chr8 (171-240)||(31980958-31981027)
chr8 (1-37)||(324119-324155)
chr8 (203-239)||(30645103-30645139)
[»] chr6 (7 HSPs)
chr6 (171-233)||(23388545-23388607)
chr6 (171-233)||(9953583-9953645)
chr6 (171-239)||(1126169-1126237)
chr6 (188-233)||(5738530-5738575)
chr6 (188-233)||(11410379-11410424)
chr6 (171-239)||(23007779-23007848)
chr6 (171-239)||(23780516-23780585)
[»] chr2 (8 HSPs)
chr2 (171-233)||(1503890-1503951)
chr2 (171-233)||(1507094-1507155)
chr2 (171-233)||(15704430-15704492)
chr2 (171-233)||(15719684-15719746)
chr2 (172-239)||(26365530-26365597)
chr2 (171-233)||(4577449-4577511)
chr2 (171-239)||(38005623-38005691)
chr2 (188-233)||(29435365-29435410)
[»] scaffold0062 (2 HSPs)
scaffold0062 (171-233)||(53342-53404)
scaffold0062 (171-233)||(68241-68303)
[»] chr4 (8 HSPs)
chr4 (171-233)||(11703044-11703106)
chr4 (171-233)||(33400777-33400839)
chr4 (188-233)||(27013894-27013939)
chr4 (174-233)||(7642772-7642831)
chr4 (172-233)||(37103661-37103722)
chr4 (188-233)||(40617140-40617185)
chr4 (3-36)||(47540135-47540168)
chr4 (171-231)||(10385562-10385622)
[»] chr3 (8 HSPs)
chr3 (171-233)||(9154414-9154476)
chr3 (171-233)||(36037422-36037484)
chr3 (171-231)||(42354869-42354930)
chr3 (171-233)||(538582-538644)
chr3 (171-233)||(17529182-17529244)
chr3 (171-233)||(17532066-17532128)
chr3 (171-231)||(2280077-2280137)
chr3 (189-233)||(44508425-44508469)
[»] scaffold0014 (1 HSPs)
scaffold0014 (171-240)||(226951-227020)
[»] scaffold0381 (1 HSPs)
scaffold0381 (188-233)||(5845-5890)
[»] chr7 (4 HSPs)
chr7 (171-231)||(22233094-22233154)
chr7 (171-231)||(22253585-22253645)
chr7 (1-36)||(44196244-44196279)
chr7 (1-37)||(24267683-24267719)
[»] chr1 (5 HSPs)
chr1 (1-36)||(24611844-24611879)
chr1 (3-37)||(24910172-24910206)
chr1 (1-38)||(5975546-5975583)
chr1 (188-233)||(49715985-49716030)
chr1 (188-233)||(49719468-49719513)
[»] scaffold0214 (3 HSPs)
scaffold0214 (188-233)||(13222-13267)
scaffold0214 (188-233)||(27238-27283)
scaffold0214 (188-232)||(19672-19716)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 39191872 - 39192096
Alignment:
Q  3 ttgttaaaaagtggatgcacatatatcatttctctataaaaagcggaaactatgaaccaaattcacgttttacggttttgggaagaaaaagaagccgcac 102  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| |||    
T  39191872 ttgttaaaaagtggatgtacatatatcatttctctataaaaagcggaaacagtgaaacaaattcacgttttacggttttgggaagaaaaagaagccacac 39191971  T
Q  103 gtgtcacgagagaggggaagacacatgaacatagaagaacttcatcaacacttgcgattggaattaatttgaggagcaacgtcgacaacgacgaaactct 202  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||    
T  39191972 gcgtcacgagagaggggaaggcacatgaacatagaagaacttcatcaacaatagcgattggaattaatttaaggagcaacgtcgacaacgacgaaactct 39192071  T
Q  203 atcgatttatttcttttactatgtt 227  Q
    |||||||||||||||||||||||||    
T  39192072 atcgatttatttcttttactatgtt 39192096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 22937428 - 22937383
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||| |||||||||| |||||||  |||||||||||||||||    
T  22937428 caacgacggaactctatcggtttattttctttactatgttgtttat 22937383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 21333169 - 21333121
Alignment:
Q  191 cgacgaaactctatcgatttatttcttttactatgttgtttatcccttt 239  Q
    ||||| |||||||||| |||||||  ||||||||||||||||| |||||    
T  21333169 cgacggaactctatcggtttattttctttactatgttgtttattccttt 21333121  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 21336185 - 21336137
Alignment:
Q  191 cgacgaaactctatcgatttatttcttttactatgttgtttatcccttt 239  Q
    ||||| |||||||||| |||||||  ||||||||||||||||| |||||    
T  21336185 cgacggaactctatcggtttattttctttactatgttgtttattccttt 21336137  T

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Target: scaffold0080 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 26706 - 26872
Alignment:
Q  74 acggttttgggaagaaaaagaagccgcacgtgtcacgagagaggggaagacacatgaacatagaagaacttcatcaacacttgcgattggaattaatttg 173  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  26706 acggttttgggaagaaaacgaagccccacgtgtcacgagagaggggaaggcacatgaacatagaagaacttcatcaacagtagcgattggaattaatttg 26805  T
Q  174 aggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttatccctttg 240  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||    
T  26806 aggagcaacgtcgacaacgacgaaactctatcggtttatttcttttaatatgttgtttatctctttg 26872  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 25595165 - 25595103
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  25595165 ttgaggagcaacgccgacaacgacgaaactctatcggtttattttttttactatgttgtttat 25595103  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 18721789 - 18721727
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||| |||||||||||||||||||||| |||||||  |||||||||||||||||    
T  18721789 ttgaggagcaacgccgacaacgacgaaactctatcggtttattttctttactatgttgtttat 18721727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 25591976 - 25591919
Alignment:
Q  176 gagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  25591976 gagcaacgtcgacaacgacgaaactctatcggtttattttctttactatgttgtttat 25591919  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 23613157 - 23613214
Alignment:
Q  176 gagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||||||||||||||||||||| |||||||  ||||||||||| |||||    
T  23613157 gagcaacgtcgacaacgacgaaactctatcggtttattttctttactatgttatttat 23613214  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 18696448 - 18696386
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||| |||  ||||||||||||||||||| |||||||  |||||||||||||||||    
T  18696448 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattttctttactatgttgtttat 18696386  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 31984593 - 31984662
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttatccctttg 240  Q
    |||||||| || | ||||||||||||| |||||||| |||||||  ||||||||||||||||| ||||||    
T  31984593 ttgaggagtaaagccgacaacgacgaagctctatcggtttattttctttactatgttgtttattcctttg 31984662  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 31980958 - 31981027
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttatccctttg 240  Q
    |||||||| || | ||||||||||||| |||||||| || ||||  ||| ||||||||||||| ||||||    
T  31980958 ttgaggagtaaagccgacaacgacgaagctctatcggttaattttctttcctatgttgtttattcctttg 31981027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 324119 - 324155
Alignment:
Q  1 agttgttaaaaagtggatgcacatatatcatttctct 37  Q
    |||||| |||||||||||| |||||||||||||||||    
T  324119 agttgtcaaaaagtggatgtacatatatcatttctct 324155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 30645103 - 30645139
Alignment:
Q  203 atcgatttatttcttttactatgttgtttatcccttt 239  Q
    |||| |||||||||||||||||||||||||| |||||    
T  30645103 atcggtttatttcttttactatgttgtttattccttt 30645139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 23388607 - 23388545
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||| |||||||||||||||||||||| |||||||  |||||||||||||||||    
T  23388607 ttgaggagcaacgccgacaacgacgaaactctatcggtttattttctttactatgttgtttat 23388545  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 9953583 - 9953645
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||| ||||||||||||||||||||||  |||||| ||||| ||||||||||||    
T  9953583 ttgaggagcaacgccgacaacgacgaaactctatcggcttattttttttattatgttgtttat 9953645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 1126237 - 1126169
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttatcccttt 239  Q
    |||||||| || | || |||||||| |||||||||| ||||||  |||||||||||||||||| |||||    
T  1126237 ttgaggagtaaagccggcaacgacggaactctatcggtttattgtttttactatgttgtttattccttt 1126169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 5738575 - 5738530
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||| |||||||||| |||||||  |||||||||||||||||    
T  5738575 caacgacggaactctatcggtttattttctttactatgttgtttat 5738530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 11410379 - 11410424
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||| |||||||||| |||||||  |||||||||||||||||    
T  11410379 caacgacggaactctatcggtttattttctttactatgttgtttat 11410424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 23007779 - 23007848
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgattta-tttcttttactatgttgtttatcccttt 239  Q
    |||||||||||   ||||||||||  ||||||||||||||| ||| |||||||| ||||||||| |||||    
T  23007779 ttgaggagcaaaaccgacaacgacataactctatcgatttatttttttttactacgttgtttattccttt 23007848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 23780585 - 23780516
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgattta-tttcttttactatgttgtttatcccttt 239  Q
    |||||||||||   ||||||||||  ||||||||||||||| ||| |||||||| ||||||||| |||||    
T  23780585 ttgaggagcaaaaccgacaacgacataactctatcgatttatttttttttactacgttgtttattccttt 23780516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 1503951 - 1503890
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  1503951 ttgaggagcaacgccgacatcgacgaaactctatcgatttattt-tcttactatgttgtttat 1503890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 1507155 - 1507094
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||| ||||| |||||||||||||||| ||||||| | ||||||||||||||||    
T  1507155 ttgaggagcaacgccgacatcgacgaaactctatcggtttattt-tcttactatgttgtttat 1507094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 15704492 - 15704430
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||| |||  ||||||||||||||||||| |||||||  |||||||||||||||||    
T  15704492 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattttctttactatgttgtttat 15704430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 15719746 - 15719684
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||| |||  ||||||||||||||||||| |||||||  |||||||||||||||||    
T  15719746 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattttctttactatgttgtttat 15719684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 26365530 - 26365597
Alignment:
Q  172 tgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttatcccttt 239  Q
    |||||||||| |  |||||||| |||||||||||| ||||||| ||||| |||||||||||| |||||    
T  26365530 tgaggagcaaagctgacaacgatgaaactctatcggtttattttttttattatgttgtttattccttt 26365597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 4577449 - 4577511
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||| || | || |||||||||| ||||||||||||||||  |||||||||||||||||    
T  4577449 ttgaggagtaaagccggcaacgacgaagctctatcgatttattttctttactatgttgtttat 4577511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 38005691 - 38005623
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttatcccttt 239  Q
    |||||||| || | || |||||||| |||||||||| |||||||  ||||||||||||||||| |||||    
T  38005691 ttgaggagtaaagccggcaacgacggaactctatcggtttattttctttactatgttgtttattccttt 38005623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 29435365 - 29435410
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||| |||||||||| |||||||  |||||||||||||||||    
T  29435365 caacgacggaactctatcggtttattttctttactatgttgtttat 29435410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 53404 - 53342
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||| |||  ||||||||||||||||||| |||||||  |||||||||||||||||    
T  53404 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattttctttactatgttgtttat 53342  T

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Target: scaffold0062; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 68303 - 68241
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||| |||  ||||||||||||||||||| |||||||  |||||||||||||||||    
T  68303 ttgaggagcaaagtcatcaacgacgaaactctatcggtttattttctttactatgttgtttat 68241  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 11703106 - 11703044
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||||  |||||||||||||||||    
T  11703106 ttgaggagcaacgccgacatcgacgaaattctatcggtttattttctttactatgttgtttat 11703044  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 33400839 - 33400777
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||| |||||||||||| |||||||| | |||||||||||||||  |||||||||||||||||    
T  33400839 ttgaagagcaacgtcgataacgacgagattctatcgatttattttctttactatgttgtttat 33400777  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 27013894 - 27013939
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||    
T  27013894 caacgacggaactctatcgatttattttctttactatgttgtttat 27013939  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 7642831 - 7642772
Alignment:
Q  174 aggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||| |||  | | |||| ||||||||||||| ||||||||||||||||||    
T  7642831 aggagcaacgtcggcaattatggaactttatcgatttattttttttactatgttgtttat 7642772  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 37103722 - 37103661
Alignment:
Q  172 tgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||||| | || ||||| ||||||||||||| |||||||  |||| ||||||||||||    
T  37103722 tgaggagcaaagccggcaacggcgaaactctatcggtttattttctttattatgttgtttat 37103661  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 40617185 - 40617140
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||| |||||||||| |||||||  |||||||||||||||||    
T  40617185 caacgacggaactctatcggtttattttctttactatgttgtttat 40617140  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 47540168 - 47540135
Alignment:
Q  3 ttgttaaaaagtggatgcacatatatcatttctc 36  Q
    ||||||||||||||||| ||||||||||||||||    
T  47540168 ttgttaaaaagtggatgtacatatatcatttctc 47540135  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 10385562 - 10385622
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgttt 231  Q
    |||| |||||||  || |||||||| ||||||||  |||||||| ||||||||||||||||    
T  10385562 ttgaagagcaacaccggcaacgacggaactctatgaatttattttttttactatgttgttt 10385622  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 9154414 - 9154476
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||||||||| ||||| |||| ||||  ||||||| ||||||||||||||||||    
T  9154414 ttgaggagcaacgtcgacatcgacggaactttatctgtttattttttttactatgttgtttat 9154476  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 36037484 - 36037422
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||| |||||||| |||||||| |||||||||||||||||||||  |||| ||||||||||||    
T  36037484 ttgatgagcaacgccgacaacgtcgaaactctatcgatttattttctttattatgttgtttat 36037422  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 42354930 - 42354869
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgattta-tttcttttactatgttgttt 231  Q
    ||||||||||||| ||||| |||||||||||||||| |||| ||| ||||||||||||||||    
T  42354930 ttgaggagcaacgccgacatcgacgaaactctatcggtttatttttttttactatgttgttt 42354869  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 538582 - 538644
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||||||||| || ||||||||||||||| || |||||||  |||||||| || |||||    
T  538582 ttgaggagcaacgtagaaaacgacgaaactctaacggtttattttatttactatattttttat 538644  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 17529244 - 17529182
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||||| ||||||||| | |||||| ||| |||| ||  |||||||||||||||||    
T  17529244 ttgaggagcaacgccgacaacgatgtaactctttcggtttacttgctttactatgttgtttat 17529182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 17532128 - 17532066
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||||||| | ||||||||||| |||||| ||| |||||||  |||||||||||| ||||    
T  17532128 ttgaggagcaatgccgacaacgacggaactctttcgctttattttctttactatgttgcttat 17532066  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 2280137 - 2280077
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgttt 231  Q
    ||||||||||||| || |||||||| || ||||||| |||||||  ||||| |||||||||    
T  2280137 ttgaggagcaacgccggcaacgacggaattctatcggtttattttctttacaatgttgttt 2280077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 44508425 - 44508469
Alignment:
Q  189 aacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    ||||||| || |||||||||||||||  |||||||||||||||||    
T  44508425 aacgacggaattctatcgatttattttctttactatgttgtttat 44508469  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 226951 - 227020
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgtttatccctttg 240  Q
    |||||||| || | ||||||||||||| |||||||| |||||||  ||||||||||||||||| ||||||    
T  226951 ttgaggagtaaagccgacaacgacgaagctctatcggtttattttctttactatgttgtttattcctttg 227020  T

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Target: scaffold0381 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 5890 - 5845
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||    
T  5890 caacgacggaactctatcgatttattttctttactatgttgtttat 5845  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 22233154 - 22233094
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgttt 231  Q
    ||||||||||||| ||| | ||| |||||||||||| ||||||| ||||| ||||||||||    
T  22233154 ttgaggagcaacgccgatatcgatgaaactctatcggtttattttttttattatgttgttt 22233094  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 22253585 - 22253645
Alignment:
Q  171 ttgaggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgttgttt 231  Q
    ||||||||||||| ||| | ||| |||||||||||| ||||||| ||||| ||||||||||    
T  22253585 ttgaggagcaacgccgatatcgatgaaactctatcggtttattttttttattatgttgttt 22253645  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44196244 - 44196279
Alignment:
Q  1 agttgttaaaaagtggatgcacatatatcatttctc 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44196244 agttgttaaaaagtggatgtacatatatcatttctc 44196279  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24267683 - 24267719
Alignment:
Q  1 agttgttaaaaagtggatgcacatatatcatttctct 37  Q
    |||||| |||||||||||| |||||||||||||||||    
T  24267683 agttgtcaaaaagtggatgtacatatatcatttctct 24267719  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 24611879 - 24611844
Alignment:
Q  1 agttgttaaaaagtggatgcacatatatcatttctc 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  24611879 agttgttaaaaagtggatgtacatatatcatttctc 24611844  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 24910172 - 24910206
Alignment:
Q  3 ttgttaaaaagtggatgcacatatatcatttctct 37  Q
    ||||||||||||||||| |||||||||||||||||    
T  24910172 ttgttaaaaagtggatgtacatatatcatttctct 24910206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5975583 - 5975546
Alignment:
Q  1 agttgttaaaaagtggatgcacatatatcatttctcta 38  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  5975583 agttgtcaaaaagtggatgtacatatatcatttctcta 5975546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 49715985 - 49716030
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||| |||||||||| |||||||  |||||||||||||||||    
T  49715985 caacgacggaactctatcggtttattttctttactatgttgtttat 49716030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 49719468 - 49719513
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||| |||||||||| |||||||  |||||||||||||||||    
T  49719468 caacgacggaactctatcggtttattttctttactatgttgtttat 49719513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 13222 - 13267
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||||| |||||||| |||||||  |||||||||||||||||    
T  13222 caacgacgaagctctatcggtttattttctttactatgttgtttat 13267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 27238 - 27283
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgtttat 233  Q
    |||||||||| |||||||| |||||||  |||||||||||||||||    
T  27238 caacgacgaagctctatcggtttattttctttactatgttgtttat 27283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 19672 - 19716
Alignment:
Q  188 caacgacgaaactctatcgatttatttcttttactatgttgttta 232  Q
    |||||||||| |||||||| |||||||  ||||||||||||||||    
T  19672 caacgacgaagctctatcggtttattttctttactatgttgttta 19716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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