View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_103 (Length: 243)
Name: NF19757_low_103
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_103 |
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| [»] scaffold0606 (2 HSPs) |
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Alignment Details
Target: scaffold0606 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 6506 - 6599
Alignment:
| Q |
1 |
tttatgtttcatataacctcatccatcatgagaatattttctctattgcaaagtaggtcaaatcaacattactaacttgagaacttaaatatca |
94 |
Q |
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| T |
6506 |
tttatgtttcatataacctcatccatcatgtgaatattttctctattgcaaagttggtcaaatcaacattactaacttgagaactgaaatatca |
6599 |
T |
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Target: scaffold0606; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 6595 - 6662
Alignment:
| Q |
163 |
tatcaagtttgtttcaaagcaaaattcata---tatcctaacaatcttgaagcgatgaaggtgcttaa |
227 |
Q |
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| T |
6595 |
tatcaagtttctttcaaagcaaaattcatactatatcctaacaatcttgaagtgatgaaggtgcttaa |
6662 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 15772788 - 15772710
Alignment:
| Q |
125 |
tcaagtgattcattccacgtctattcataaataagtgttatcaagtttgtttcaaagcaaaattcatatatcctaacaa |
203 |
Q |
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| T |
15772788 |
tcaagtgatccatttcccatgtattcataaacaagcgctatcaagtttctttcaaagcaaaatccatataacctaacaa |
15772710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 16636756 - 16636689
Alignment:
| Q |
3 |
tatgtttcatataa-cctcatccatcatgagaatattttctctattgcaaagtaggtcaaatcaacat |
69 |
Q |
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| T |
16636756 |
tatgttgcatataaacctcctccatcaagtggatattttctctattgcaaatttggtcaaatcaacat |
16636689 |
T |
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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 15795180 - 15795273
Alignment:
| Q |
125 |
tcaagtgattcattccacgtctattcataaataagtgttatcaagtttgtttcaaagcaaaattcatatatcctaacaatcttgaagcgatgaa |
218 |
Q |
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| T |
15795180 |
tcaagtgatccatttcccatgtattcataaacaagtgctatcaagtttttctcaaagcaaaatccaaatagcttaacaagattgaagtgatgaa |
15795273 |
T |
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