View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_105 (Length: 239)
Name: NF19757_low_105
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43961609 - 43961389
Alignment:
| Q |
1 |
tgtaataaaaattggaaaaatatcaaaggcaagaaatatacatcatcctgctgaaagaagtttcttgatgagaaaaaataataccttccaaggaagataa |
100 |
Q |
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| T |
43961609 |
tgtaataaaaattggaaaaatatcaaaggcaagaaatatacatcatcctgctgaaagaagtttcttgatgagaaaaaataataccttccaaggaagataa |
43961510 |
T |
|
| Q |
101 |
atgaaattatccatagaattaagctgatccaattagcttccttgtgagcaacccatgcctaatgtgataaacaaccatatgtcagaaacaaaaatcgcaa |
200 |
Q |
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| T |
43961509 |
atgaaattatccatagaattaagctgatccaattagcttccttgtgagcaacccatgcctaatgtgataaacaaccatatgtcagaaacaaaaatcacaa |
43961410 |
T |
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| Q |
201 |
aaatagtgaagaagattatag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43961409 |
aaatagtgaagaagattatag |
43961389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 43954740 - 43954670
Alignment:
| Q |
75 |
aaaataataccttccaaggaagataaatgaaattatccatagaattaagctgatccaattagcttccttgt |
145 |
Q |
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|||| |||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||||||| |
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| T |
43954740 |
aaaacaataccttccaaggccgataagtaaaattatccatagaatcgagctgatccaattagcttccttgt |
43954670 |
T |
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