View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_108 (Length: 237)
Name: NF19757_low_108
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_108 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 513739 - 513524
Alignment:
| Q |
18 |
gagcttatttctcacaaacctgctccgacgccattcccccaaacnnnnnnntttagaactactcaaagttctgcccaactaagtgataaaaaggaaacat |
117 |
Q |
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| T |
513739 |
gagcttatttctcacaaacctgctccgacgccattcccccaaacaaaaaaatttagaactactcaaagttctgcccaactaagtgataaaaaggaaacat |
513640 |
T |
|
| Q |
118 |
tattgaatgatgatggttttcctgttgatgtacagcgagtgaggcatgatcttgtttccatatcaggtcctatacatagccatattattttgaactccta |
217 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
513639 |
tattgaatggtgatggttttcctgttgatatacagcgagtgaggcatgatcttgtttccatatcaggtcctatacatagccatattattttgaactcctc |
513540 |
T |
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| Q |
218 |
tgaaacaaattttcct |
233 |
Q |
| |
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||||||||| |||||| |
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| T |
513539 |
tgaaacaaagtttcct |
513524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 563409 - 563613
Alignment:
| Q |
29 |
tcacaaacctgctccgacgccattcccccaaacnnnnnnntttagaactactcaaagttctgcccaactaagtgataaaaaggaaacattattgaatgat |
128 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
563409 |
tcacaaacctgctccgacgccattcccccaaacaaaaaaatttagaactactcaaagttctgcccaactaagtgataaaaaggaaacattattgaatgat |
563508 |
T |
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| Q |
129 |
gatggttttcctgttgatgtacagcgagtgaggcatgatcttgtttccatatcaggtcctatacatagccatattattttgaactcctatgaaacaaatt |
228 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |
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| T |
563509 |
gatggttttcctgttgatatacagcgagtgaggcatgatcttgtttccatatcaggtcctatacatagccatattattttgaactcctctgagacaaagt |
563608 |
T |
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| Q |
229 |
ttcct |
233 |
Q |
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||||| |
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| T |
563609 |
ttcct |
563613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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