View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19757_low_11 (Length: 598)
Name: NF19757_low_11
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 2016404 - 2016167
Alignment:
| Q |
20 |
ttgtagaattaccttaattaaggtatgatattatcattaataattggttgcataataaagtattttatcatcattgttttgcatgcagtatcatatcatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2016404 |
ttgtagaattaccttaattaaggtatgatattatcattaataattggttgcataataaagtattttatcatcattgttttgcatgtagtatcatatcatc |
2016305 |
T |
|
| Q |
120 |
attggtattagtataaggtgcc-----------ttatannnnnnnnnnatcaataaacagtattggcggctgtttttagttattgaaggaatgacataca |
208 |
Q |
| |
|
|| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
2016304 |
gttagtattagtataaggtgcctttttttttttttttttttttttttaatcaataaacagtattggcggctgtttttagttgttgaaggaatgacatata |
2016205 |
T |
|
| Q |
209 |
ctctttattcactattataaacgataaattcacttttt |
246 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
2016204 |
ctctttgttcactattataagcaataaattcacttttt |
2016167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 178 - 404
Target Start/End: Complemental strand, 2008950 - 2008741
Alignment:
| Q |
178 |
ctgtttttagttattgaaggaatgacatacactctttattcactattataaacgataaattcactttttagatttattgaaatgtaatatatggtcagca |
277 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
2008950 |
ctgttttttgttgttgaaggaatgacatacactctttgttcactattataagcgataaattcactttttagatttattgaaat----------------a |
2008867 |
T |
|
| Q |
278 |
tatttatcatgacaattgtcttacacttcacattctttttattagattcattctgatagatcttacactggactttttcgtgatgccatgtaatgtctgt |
377 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||||| ||||||||||||||||| || |
|
|
| T |
2008866 |
tatttaccatgacaattgtcttacacttcacattctttttattagatgcattcttataggtcttacacttaactttttggtgatgccatgtaatgtttga |
2008767 |
T |
|
| Q |
378 |
ggttcaagtcatggagacttgttttct |
404 |
Q |
| |
|
|||||||| ||| |||||||||||||| |
|
|
| T |
2008766 |
ggttcaagccat-gagacttgttttct |
2008741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 459 - 526
Target Start/End: Complemental strand, 2008681 - 2008614
Alignment:
| Q |
459 |
cgagtctactatatggttccatacttattaacataacaatagaaaatcatacttattttagtctaaac |
526 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| || |||||| ||||||||| |
|
|
| T |
2008681 |
cgagtctactatacggttccatacttattaacataacaatagaaaatcctatttatttcagtctaaac |
2008614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 2009047 - 2008994
Alignment:
| Q |
16 |
aaaattgtagaattaccttaattaaggtatgatattatcattaataattggttg |
69 |
Q |
| |
|
||||||||||||||| | |||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
2009047 |
aaaattgtagaattagcgtaatcaaggtacgatattatcataaataattggttg |
2008994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University