View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_12 (Length: 597)
Name: NF19757_low_12
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 226 - 581
Target Start/End: Complemental strand, 48754098 - 48753742
Alignment:
| Q |
226 |
gttcatcctatgctaatacccttggcacattgacattgttgttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtctt-gt |
324 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48754098 |
gttcatcctatgctaatacccttggcacattgccattgttgttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtctttgt |
48753999 |
T |
|
| Q |
325 |
gctgataggtaagtgtggattcaagcaggtcttcaagtgaagtctttggattccatccaagctgcttgttgatgattgtcatgtcaggaattctcttgtc |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48753998 |
gctgataggtaagtgtggattcaagcaggtcttcaagtgaagtctttggattccatccaagctgcttgttgatgatggtcatgtcaggaattctcttgtc |
48753899 |
T |
|
| Q |
425 |
actatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaagaggttgatcaccacttacctttgaataaaccttgatc |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48753898 |
actatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaagaggttgatcaccacttacctttgaataaaccttgatc |
48753799 |
T |
|
| Q |
525 |
atcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaat |
581 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48753798 |
atcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaat |
48753742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 264 - 581
Target Start/End: Complemental strand, 49052694 - 49052377
Alignment:
| Q |
264 |
ttgttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcttcaagtg |
363 |
Q |
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||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49052694 |
ttgttttaacttgcaatggtttgtgcaatgactttcttaatagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcctcaagtg |
49052595 |
T |
|
| Q |
364 |
aagtctttggattccatccaagctgcttgttgatgattgtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagct |
463 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49052594 |
aagtcttcggattccatccaagctgcttgttgatgatggtcatatcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagct |
49052495 |
T |
|
| Q |
464 |
cacatcaactgtaggtgtttcaagaggttgatcaccacttacctttgaataaaccttgatcatcatttcagccagctcccgaaccgtaacctcattgttc |
563 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |
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| T |
49052494 |
cacatcaattgtaggagtttcaagaggttgatcaccacttacctttgaataaaccttgatcatcatttcagctagctcccgaactgtaacctcgttgttc |
49052395 |
T |
|
| Q |
564 |
gggttacccacattaaat |
581 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
49052394 |
gggttacccacattaaat |
49052377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 48754312 - 48754210
Alignment:
| Q |
12 |
atcatcatatgtagttaatacaaacaagagaatcataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaaacctta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
48754312 |
atcatcatatgtagttaatacaaacaagagaatcataattcaaatttctgctagagcaacctaacaaagccttatcataaatatgaactgtcaaaactta |
48754213 |
T |
|
| Q |
112 |
acc |
114 |
Q |
| |
|
||| |
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|
| T |
48754212 |
acc |
48754210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 384 - 519
Target Start/End: Original strand, 20488359 - 20488494
Alignment:
| Q |
384 |
agctgcttgttgatgattgtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgttt |
483 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
20488359 |
agctgcttgttgattatggtcatgtcaggaattctcttgtcactatcatcatatccctcaccataaaattctttcgagctcacatcaatcgtaggtgttt |
20488458 |
T |
|
| Q |
484 |
caagaggttgatcaccacttacctttgaataaacct |
519 |
Q |
| |
|
|| | |||||| ||||| ||||||||||| |||| |
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| T |
20488459 |
caggtggttgagttccactaacctttgaatagacct |
20488494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 267 - 380
Target Start/End: Original strand, 20488155 - 20488268
Alignment:
| Q |
267 |
ttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcttcaagtgaag |
366 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || | ||||| || |||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20488155 |
ttttaacttgcaattggttgagcaatgactttcttaatggcttcggcgtatgtcctgtgctgataggtaagtgtggattcaagcaggtcccaaagtgaag |
20488254 |
T |
|
| Q |
367 |
tctttggattccat |
380 |
Q |
| |
|
|||||||||||||| |
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|
| T |
20488255 |
tctttggattccat |
20488268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 35914421 - 35914347
Alignment:
| Q |
32 |
caaacaagagaat-cataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaa |
105 |
Q |
| |
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||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| | ||||||||| |
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| T |
35914421 |
caaacgagagaattcataattcaaatatctgctagagcaacctaacaaagctttataagaaatgttaactgtcaa |
35914347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 516 - 580
Target Start/End: Original strand, 20488577 - 20488641
Alignment:
| Q |
516 |
accttgatcatcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaa |
580 |
Q |
| |
|
|||| ||||||||||||||| |||| || ||| |||||||||||||| ||||||||||||||||| |
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|
| T |
20488577 |
acctggatcatcatttcagcgagctgcctaactgtaacctcattgtttgggttacccacattaaa |
20488641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 35914211 - 35914143
Alignment:
| Q |
287 |
tgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtc |
355 |
Q |
| |
|
||||||||||| ||| | ||||| |||||| |||| ||||| ||||||||||||||||||||||||||| |
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| T |
35914211 |
tgcaatgacttctttaatagcttaagcataagtctcgtgcttataggtaagtgtggattcaagcaggtc |
35914143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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