View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_120 (Length: 210)
Name: NF19757_low_120
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_120 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 26722879 - 26722707
Alignment:
| Q |
1 |
atcgttagtatatgcatcgtatgcaccaaaatatttatatatttgttcataaattaacttaccaaaaatcaaaagataacatcatatgtggtttcttctc |
100 |
Q |
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| T |
26722879 |
atcgtgagtatatgcatcgtatgcaccaaaatatttatatatttgttcataaattaacttaccaaaaatcaaaagataacttcatatgtggtttcttctc |
26722780 |
T |
|
| Q |
101 |
atagtaaaattggaaattagtaacatcatggtgaaatggagtaggaacaaaaactataccaattgcaggaagg |
173 |
Q |
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| T |
26722779 |
atagtaaaattggaaattagtaacatcatggtgaaatggagtaggaacaaaaactataccaattgcaggaagg |
26722707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 26837771 - 26837902
Alignment:
| Q |
10 |
atatgcatcgtatgcaccaaaatatttatatatttgttcataaattaacttaccaaaaatcaaaagataacatcatatgtggtttcttctcatagtaaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||| ||||||||||||| |||||||||||||||||| |
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| T |
26837771 |
atatgcatcgtatgcaccaaaatatttatatatttgtttatgaattagctcatcaaaaattcaaagataacatcac------tttcttctcatagtaaaa |
26837864 |
T |
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| Q |
110 |
ttggaaattagtaacatcatggtgaaatggagtaggaa |
147 |
Q |
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| T |
26837865 |
ttggaaattagtaacatcatggtgaaatggagtaggaa |
26837902 |
T |
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