View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_13 (Length: 594)
Name: NF19757_low_13
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 20 - 578
Target Start/End: Original strand, 42928172 - 42928712
Alignment:
| Q |
20 |
tttccaagcttgcttgccaatcatagcaatgttgaaagctttgagattcttgaatcccatactgccgaagctcttcggagttgaaacacgctcccatgac |
119 |
Q |
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| T |
42928172 |
tttccaagcttgcttgccaatcatagccatgtttaaagctttgagattcttgaatcccatactgccgaagctcttcggagttgaaagacgctcccatgac |
42928271 |
T |
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| Q |
120 |
atccagtgaattcctttagaatttgtggcatcatgaccccaccaaaatgaattaagcatcttctctatttcatgtaagcactttaatatctctttatttg |
219 |
Q |
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| T |
42928272 |
atccagtgaattcctttagaatttgtggcattatgac------------------gcatcttctctatttcatgtaagcactttaatatctctttatttg |
42928353 |
T |
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| Q |
220 |
ttatggattgtttgtttaggtgtcagtcttcatttcttgttgaaggcttccacaactttgttgagctaagaagacaggcaagtcattttctaccttgcac |
319 |
Q |
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| T |
42928354 |
ttatggattgtttgtttaggtatcagtcttcatttcttgttgaaggctgccacaactttgttgagctaagaagacaggcaagtcattttctaccttgcac |
42928453 |
T |
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| Q |
320 |
tgccattttgagattttctactattgtattagaacatcaaaattacctagttctataattggtacattgttaatgtatagaaatgaaattgtagttctaa |
419 |
Q |
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| T |
42928454 |
tgccattttgagattttctactattgtattagaacatcaaaattacctggttctataatgggtacattgttaatgtatagaaatgaaattgtagttctaa |
42928553 |
T |
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| Q |
420 |
ttatagctatgatgtccaattttttacagaaagttttgtagctaannnnnnnnactcaatgttttggagctaatgaacagactgtatatcatnnnnnnnn |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
42928554 |
ttatagctatgatgtccaattttttacagaaagttttgtagctaatttttcttactcaatgttttggagctaatgaacagactgtatgtcataaaaaaaa |
42928653 |
T |
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| Q |
520 |
ttaacgacctgtattatatatgcttgaatataataagataaatatacatcacagttcat |
578 |
Q |
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| T |
42928654 |
ttaacgacctgtattatatatgcttgaatataataagataaatatacatcacagttcat |
42928712 |
T |
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