View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19757_low_18 (Length: 571)
Name: NF19757_low_18
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 2267640 - 2268203
Alignment:
| Q |
1 |
acttgttctagtggctagtctctgatactcagttttaagacttgaatgagcaacttgttgctgctttttagaccaccatgaaaataaactagtttcaaag |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2267640 |
acttgttccagtggctagtctctgatactcagttttaagacttgaatgagcaacttgttgctgctttttagaccaccatgaaaataaactagtttcaaag |
2267739 |
T |
|
| Q |
101 |
tatgtgctagaccctgaattagagcacctgtcatcagggttagatgcccaattggcatctcaaaatacctgtaaatgagatgactggtctggcagtaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2267740 |
tatgtgctagaccctgaattagagcacctgtcatcagggttggatgcccaattggcatctcaaaatacctgtaaatgagatgactggtctggcagtaaaa |
2267839 |
T |
|
| Q |
201 |
gaaggccatgatcagtggagcctttaagataccgccgaatgcgctttgataattttccaatgctcaatttgtggtcatgccataaataggcacatcgtag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2267840 |
gaaggccatgatcagtggagcctttaagataccgccgaacgcgctttgataattttccaatgctcaatttgtggtcatgccataaataggcacattgtag |
2267939 |
T |
|
| Q |
301 |
ttacacttaagttaatttcagttctggtgatagttgcatattgtaatagcctgcacctacaatagaatgacagggctgagtctaagccatgtaccgtaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2267940 |
ttacacttaagttaatttcagttctggtgatagttgcatattgtaatagcctgcacctacaatagaatgacagggctgagtctaagccatgcaccgtaag |
2268039 |
T |
|
| Q |
401 |
agctgtagatgctggtttccactataatatctataactattcataattacccttgcataactattcttcacatttgctcttcggtaactagtaaaatttc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2268040 |
agctgtagatgctggtttccactataatatctataactattcataattacccttgcataactattcttcacatttgctctttggtaactagtaaaatttc |
2268139 |
T |
|
| Q |
501 |
tataatgacattctaattgatagtaatgttgggaattaacttagatacttgatttcttctcact |
564 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2268140 |
tataatgacattgtaattgatagtaatgttgggaattaacttagatacttgatttcttcacact |
2268203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 105 - 294
Target Start/End: Complemental strand, 650476 - 650285
Alignment:
| Q |
105 |
tgctagaccctgaattagagcacctgtcatcagggttagatgcccaattggcatctcaaaatacctgt-aaatgagatgactggtctggcagtaaaagaa |
203 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||| |||| ||||||||||||| |||||||||||| ||| || |||||| |||| | |||||||| |
|
|
| T |
650476 |
tgctagaccctaaagtagatcacctgtcatcagggtcagattcccaattggcatcgcaaaatacctgtaaaacgatgtgactgatctgtcggtaaaagat |
650377 |
T |
|
| Q |
204 |
ggccatgatcagtggagcc-tttaagataccgccgaatgcgctttgataattttccaatgctcaatttgtggtcatgccataaataggcaca |
294 |
Q |
| |
|
||||||||||||| ||||| |||||||||| || ||||| || ||| |||||||| ||||||| || |||| |||||||||||| |||||| |
|
|
| T |
650376 |
ggccatgatcagttgagccttttaagatactgcaaaatgcactctgacaattttcctatgctcatttagtggccatgccataaattggcaca |
650285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University