View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_19 (Length: 557)
Name: NF19757_low_19
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 227 - 553
Target Start/End: Original strand, 10047730 - 10048062
Alignment:
| Q |
227 |
aaagagttaatcacgccaacatattgagccgagccaaagcaaaattatgtactcggctgtatga------agtcacgtgacaagaattcggtgtatggtc |
320 |
Q |
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| T |
10047730 |
aaagagttaatcacgccaacatattgagccgagccaaagcaaaattatgtactcggctgtatgattggtgagtcacgtgacaaggattcggtgtatggtc |
10047829 |
T |
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| Q |
321 |
ctacaccagcagtatatagtttctaggtagggagatgatatcatgtctgtgtatctgcaggacaatctaagtagaattcagtgccataaatatttatccc |
420 |
Q |
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| T |
10047830 |
ctataccagcagtatatagtttctaggtagggagatgatatcatgtctgtgtatctgcaggacaatgtaagtagaattcagtgccataaatatttatccc |
10047929 |
T |
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| Q |
421 |
agttcgtctgatttctcaattgattctttacctctaatgttttcttgtaaatcttgcgttcttttgtttaaaatcaaattacagtagagaacatatttgt |
520 |
Q |
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| T |
10047930 |
agtgtgtctgatttctcaattgattctttacctctaatgttttcttgtaaatcttgcgttcttttgtttaaaatcaaattacagtagagaacatatttgt |
10048029 |
T |
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| Q |
521 |
catcacatccatgttttaggtcctatgctactc |
553 |
Q |
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| T |
10048030 |
catcacatgcatgttttaggtcccatgttactc |
10048062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 10047685 - 10047734
Alignment:
| Q |
28 |
tagttttcttggaccacatatatgatggtccaaccatgcataataaaaga |
77 |
Q |
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| T |
10047685 |
tagttttgttggaccacaaatatgatggtccaaccatgcataataaaaga |
10047734 |
T |
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