View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_2 (Length: 906)
Name: NF19757_low_2
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 736; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 16 - 892
Target Start/End: Original strand, 35407561 - 35408440
Alignment:
| Q |
16 |
aatatcattaccaaataaatgtcaaataattgagtattgattcttacannnnnnnncaaaagaaataaaggattaaattactataaattttaggtcatga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35407561 |
aatatcattaccaaataaatgtcaaataattgagtattgattcttacattttttttcaaaagaaataaaggattaaattactataaattttaggtcataa |
35407660 |
T |
|
| Q |
116 |
ctaatatttagttaatgtcatcaatttnnnnnnngtgtgtgattactttaccatatgacactnnnnnnnntgtttttggagaaacagaagattcaacctc |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
35407661 |
ctaatatttagttaatgtcatcaatttaaaaaaagtgtgtgattactttaccat--gacactaaaaaaaatgtttttggagaaacagaagattcaacctc |
35407758 |
T |
|
| Q |
216 |
aactgtttgatacactc--tatattattttaccatatgacattaaagatttagatataatgataactaaatcatgaatgcaagggttaaaatagtataaa |
313 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35407759 |
aactgtttgatacactcattatattattttaccatatgacattaaagatttagatataatgataactaaatcatgaatgcaagggttaaaatagtataaa |
35407858 |
T |
|
| Q |
314 |
atttgatgcaaaatgtaactttcacagatagatctagcttgcaaatgattctggctgatccttaattaaacttcaagttgttatcttctcattatattaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
35407859 |
atttgatgcaaaatgtaactttcacagatagatctagcttgcaaatgattctggttgatcctcaattaaacttcaagttgttatcttcccattatattaa |
35407958 |
T |
|
| Q |
414 |
aatgtcaacaagatcaatttttcttttcatcactctataaagttgcaattcaacttgacaccgaatcgttttaataaatttttaatttgagaattgaatg |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35407959 |
aatgtcaacaagatcaatttttcttttcatcactctataaagttgcaattcaacttgacaccgaatcgttttaataaatttttaatttgagaattgaatg |
35408058 |
T |
|
| Q |
514 |
taatcaagattgctttatttgtacttcaagttatattatcttttcttacactcttaaactttgttaaacattgttgtgatttgacaaatgnnnnnnnaat |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35408059 |
taatcaagattgctttatttgtacttcaagttatattatcttttcttacactcttaaactttgttaaacattgttgtgatttgacaaatgtttttttaat |
35408158 |
T |
|
| Q |
614 |
c---ataatattagtaatttactatttctgatggaagaagactttgcactaattatatgtactcaaataattaaaataaaatttgttcgtgtgcagcatg |
710 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35408159 |
cataataatattagtaatttactatttctgatggaagaagactttgcactaattatatgtactcaaataattaaaataaaatttgttcgtgtgcagcatg |
35408258 |
T |
|
| Q |
711 |
cgatcgcatacacaggatcatcacaagagatctacggtgcaaaagcatcaataagtgtgtgggatccatcaattgaagtgatgaacgagttcagtctctc |
810 |
Q |
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| T |
35408259 |
cgatcgcgtacacaggatcatcacaagagatctacggtgcaaaagcatcaataagtgtgtgggatccatcaattgaagtgatgaacgagttcagtctctc |
35408358 |
T |
|
| Q |
811 |
tcaaatttgggtcctctctggttctttcgatggtcctgatcttaacagcatcgaagctggatggcaggtactccttctgact |
892 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35408359 |
tcaaatttgggtcctctctggttctttcgatggtcctgatcttaacagcatcgaagctggatggcaggtactccttctgact |
35408440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 749 - 880
Target Start/End: Complemental strand, 48018981 - 48018850
Alignment:
| Q |
749 |
gcaaaagcatcaataagtgtgtgggatccatcaattgaagtgatgaacgagttcagtctctctcaaatttgggtcctctctggttctttcgatggtcctg |
848 |
Q |
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||||||||| |||||| ||||||||||||| | | ||||| | ||||| || ||||| |||||||||||| | || ||||| ||||| | ||| | | |
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| T |
48018981 |
gcaaaagcaacaataaatgtgtgggatccaacggtggaagtagtcaacgaatttagtctttctcaaatttggattctttctggatcttttggtggctcag |
48018882 |
T |
|
| Q |
849 |
atcttaacagcatcgaagctggatggcaggta |
880 |
Q |
| |
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||||||| ||||| |||||||| ||||||||| |
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| T |
48018881 |
atcttaatagcattgaagctggttggcaggta |
48018850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 848 - 882
Target Start/End: Original strand, 36692166 - 36692200
Alignment:
| Q |
848 |
gatcttaacagcatcgaagctggatggcaggtact |
882 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
36692166 |
gatcttaacagcatcgaagctggctggcaggtact |
36692200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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