View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_20 (Length: 551)
Name: NF19757_low_20
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 12 - 534
Target Start/End: Complemental strand, 42475484 - 42474969
Alignment:
| Q |
12 |
cagcacagagcttttaatgcattataaaaataggcaacatgtcccaactagctttttgagctatcaggaatggaggtatttgggtttttatcaaagctcc |
111 |
Q |
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| T |
42475484 |
cagcactgagcttttaatgcattataaaaataggcaacatgtcccaactagcttttcgagctatcaggaatggaggtatttgggtttttatcaaagctcc |
42475385 |
T |
|
| Q |
112 |
caggggcattctatcaaaatgattcacttacaaacagattttgcaagtaaaatccagttgtaatatgagttaggtaacaaggtataatgcaaagcttaca |
211 |
Q |
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| T |
42475384 |
caggggcattctatcaaaatgattcacttacaaacaggttttgcaagtaaaatccagttgtaatatgagttaggtaacaaggtataatgcaaagcttaca |
42475285 |
T |
|
| Q |
212 |
gttgacaattttcacacccaacttttcataaaaaatatcaagtttctataaattagtatttaactttaatcaagattatggaatctaatgcacacacagg |
311 |
Q |
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| T |
42475284 |
gttgacaattttcacacccaacttttcataaaaaatatcaagtttgtataaattagtatttaactttaatcaagattatggattctaatgcacacacagg |
42475185 |
T |
|
| Q |
312 |
actttgtccatggactatgatggtcacttcacccattctcacaacaaactagtgccctcatttaatatgactcgtgtattacgtttaaataaatacatgc |
411 |
Q |
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| T |
42475184 |
actttgt-------ctatgatggtcacttcacccattctcacaacaaacaagtgccctcatttaatatgactcgtgtattacgtttaaataaatacatgc |
42475092 |
T |
|
| Q |
412 |
acgcacccaaatattcgtagttcaagtttaacctctaactttgaccatttttcatttccaaaactaaggatgatgaatatttgactgtaatgatgcactt |
511 |
Q |
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| T |
42475091 |
acgcacccaaatattcgtagttcaagtttaacctctaactttgaccatttttcatttccaaaactaaggatgatgaatatttgactgtaatgatgcactt |
42474992 |
T |
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| Q |
512 |
gtaatattccataggtaagttgt |
534 |
Q |
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| T |
42474991 |
gtaatattccataggtaagttgt |
42474969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 216 - 525
Target Start/End: Complemental strand, 42480781 - 42480479
Alignment:
| Q |
216 |
acaattttcacacccaacttttcataaaaa--atatcaagtttctataaattagtatttaactttaatcaagattatggaatctaatgcacacacaggac |
313 |
Q |
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|||| ||||||||||||||||| ||||||| |||| |||||| |||||||||||||||||||| |||| |||||||||| ||| ||||||||||| ||| |
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| T |
42480781 |
acaactttcacacccaactttttataaaaacaatattaagtttgtataaattagtatttaacttcaatcgagattatggattctgatgcacacacatgac |
42480682 |
T |
|
| Q |
314 |
tttgtccatggactatgatggtcacttcacccattctcacaacaaactagtgccctcatttaatatgactcgtgtattacgtttaaataaatacatgcac |
413 |
Q |
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| T |
42480681 |
ttt---------ctatgatggtcacttcaccaattttcacaacaaactagtgctctcgtttaatatgactagtgtatcatgtgtaaataaatatatgaac |
42480591 |
T |
|
| Q |
414 |
gcacccaaatattc-gtagttcaagtttaacctctaactttgaccatttttcatttccaaaactaaggatgatgaatatttgactgtaatgatgcacttg |
512 |
Q |
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| T |
42480590 |
gcacacaa-tatactgtagtttaagtttaacctctaactctgaccatttttcatttccaaaactaaggatcatgaacatttgactgtaatgatgcacttt |
42480492 |
T |
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| Q |
513 |
taatattccatag |
525 |
Q |
| |
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||||||||||||| |
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| T |
42480491 |
taatattccatag |
42480479 |
T |
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