View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19757_low_22 (Length: 547)
Name: NF19757_low_22
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 24)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 15 - 471
Target Start/End: Original strand, 10717410 - 10717866
Alignment:
| Q |
15 |
caaaggatggtttttggtttctcttactcatccagcagatagaaataacaaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaa |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||| |
|
|
| T |
10717410 |
caaaggatggtttttggtttctcttcctcatccagcagatagaaataacaaatgaaagtatgagcaaaaaaaaaatcacactaaatatcactgctatcaa |
10717509 |
T |
|
| Q |
115 |
cttgaaattatgnnnnnnngcacttttactacccttgatagggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatg |
214 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10717510 |
cttgaaattatgtttttttgcactcttactacccttgatagggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatg |
10717609 |
T |
|
| Q |
215 |
tctatatgggatgcattcgcaaaaacaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgca |
314 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10717610 |
tctatatgggatgcatttgcaaaaacaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgca |
10717709 |
T |
|
| Q |
315 |
taacatcagggattggtccgtacaattgatttcttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatgga |
414 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10717710 |
taacatcaggaattggtccgtacaattgatttcttgaaaggtctaaatatcttaaagccttgagagaagccaaagaggatggtattgttccattgatgga |
10717809 |
T |
|
| Q |
415 |
gttcccttccaaatgaagatattccaagctcatgcattcaccaatggttccaggaat |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10717810 |
gttcccttccaaatgaagatattccaagctcatgcattcaccaatggttccaggaat |
10717866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 471
Target Start/End: Original strand, 10741169 - 10741625
Alignment:
| Q |
15 |
caaaggatggtttttggtttctcttactcatccagcagatagaaataacaaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaa |
114 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10741169 |
caaaggatgggttttggtttctcttcctcatccagcagatagaaataacaaatgaaagtatgagcagaaaagaaatcacgctaactatcactgctatcaa |
10741268 |
T |
|
| Q |
115 |
cttgaaattatgnnnnnnngcacttttactacccttgatagggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatg |
214 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
10741269 |
cttgaaattatgtttttttgcatgtttactatccttgatagggcatgatggtagatgcaactctgaaatacctccacaaagctttttgtttccaatcact |
10741368 |
T |
|
| Q |
215 |
tctatatgggatgcattcgcaaaaacaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgca |
314 |
Q |
| |
|
||||| || ||| |||| |||| ||||||| |||||||||||| |||||||| | |||||||||||||||||||| ||| |||||| |||| ||| || |
|
|
| T |
10741369 |
tctatttgagatacatttccaaatacaccatttgttggtacctctccttccaataagttaaaagaaacattcaagtattccaaaccagagatactcttca |
10741468 |
T |
|
| Q |
315 |
taacatcagggattggtccgtacaattgatttcttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatgga |
414 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||||||||||||||||| | | ||| ||||||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
10741469 |
taacatcaggaattgatccagacaattgatttcttgaaaggtctaaactttgaagacctttgagagaagccatagaggatggtattgttccgctgaagga |
10741568 |
T |
|
| Q |
415 |
gttcccttccaaatgaagatattccaagctcatgcattcaccaatggttccaggaat |
471 |
Q |
| |
|
|||||||| ||| ||||| ||||| ||| | ||||||||||||| |||| |||||| |
|
|
| T |
10741569 |
gttcccttgcaattgaaggtattctaaggttgtgcattcaccaattgttctaggaat |
10741625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 15 - 444
Target Start/End: Original strand, 11049127 - 11049556
Alignment:
| Q |
15 |
caaaggatggtttttggtttctcttactcatccagcagatagaaataacaaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaa |
114 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||| |||| |||| |||||||||| ||| |||||||||| ||||||||||||||||| || ||| |
|
|
| T |
11049127 |
caaaagatggtttttggtttctttttttcatccaggtgataattataataaatgaaagtatgataagaaaagaaaccacactaactatcactgataccaa |
11049226 |
T |
|
| Q |
115 |
cttgaaattatgnnnnnnngcacttttactacccttgatagggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatg |
214 |
Q |
| |
|
| |||||||||| ||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
11049227 |
cctgaaattatggtttgttgcatgttttctacctttgatagggcatgatggtagatgcaaatctgaaatacctccacaaagcttattgtttcctatcatt |
11049326 |
T |
|
| Q |
215 |
tctatatgggatgcattcgcaaaaacaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgca |
314 |
Q |
| |
|
||| ||||| |||||| |||| ||||| | |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |||| ||||| | |
|
|
| T |
11049327 |
gctacatgggttgcatttccaaagacaccgtttgttggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaagatattctgta |
11049426 |
T |
|
| Q |
315 |
taacatcagggattggtccgtacaattgatttcttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatgga |
414 |
Q |
| |
|
|||||| || |||| ||| || ||||||||||| ||||||||||||||| | ||| ||||| |||||||||||||| |||||||||||||||| ||| |
|
|
| T |
11049427 |
taacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaagga |
11049526 |
T |
|
| Q |
415 |
gttcccttccaaatgaagatattccaagct |
444 |
Q |
| |
|
|||||||| ||| |||| ||||| ||||| |
|
|
| T |
11049527 |
gttcccttgcaagagaaggtattcgaagct |
11049556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 148 - 527
Target Start/End: Complemental strand, 10604358 - 10603979
Alignment:
| Q |
148 |
cttgatagggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacaccatct |
247 |
Q |
| |
|
||||| || ||||| |||||||||||||| |||||| ||||||||||||||||| ||||| ||||| ||| |||| |||||| ||| ||||| | | |
|
|
| T |
10604358 |
cttgacagagcatggtggtagatgcaactgtgaaattcctccacaaagcttataatttccgatcattgctacttgggttgcatttcgaaagacaccgttt |
10604259 |
T |
|
| Q |
248 |
gttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttc |
347 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||| | | |||| ||||||| ||||||||| |||||||| ||||||||||||| |
|
|
| T |
10604258 |
gttggcacctcaccttccaacatgttaaaggaaacattcaagtgttctaagctagagatattctgcaaaacatcaggaattggtccatacaattgatttc |
10604159 |
T |
|
| Q |
348 |
ttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcat |
447 |
Q |
| |
|
|||||| ||||||||| || ||| ||||||||||| |||||||||||||||||||| |||| |||||||||| |||| |||| ||||| ||||| || |
|
|
| T |
10604158 |
ttgaaatatctaaatattgtagacctttgagagaagcaaaagaggatggtattgttccgttgaatgagttcccttgcaaacgaaggtattctaagcttat |
10604059 |
T |
|
| Q |
448 |
gcattcaccaatggttccaggaatgccccccgacaaattattgtcagagacatctagctcatcaatattttttaacatac |
527 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |||||| ||| ||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
10604058 |
gcattcaccaatagttccaggaatctccccacacaaatgattttcagagacatctaaccaatcaatattttttagcatac |
10603979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 59 - 521
Target Start/End: Original strand, 10217263 - 10217722
Alignment:
| Q |
59 |
ataacaaatgaaagtgtgagcagaaaagaaatcacactaactatc--actgctatcaacttgaaattatgnnnnnnngcacttttactacccttgatagg |
156 |
Q |
| |
|
|||| |||||||||| ||| |||||||||| ||||||||||||| |||| ||||||| || |||||| ||| ||| ||||| |||||||| |
|
|
| T |
10217263 |
ataataaatgaaagtatgataagaaaagaaaccacactaactatctcactgatatcaacctggaattatagtttgttgcatgtttcctaccgttgatagg |
10217362 |
T |
|
| Q |
157 |
gcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacaccatctgttggtacc |
256 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || ||| | |||| |||| ||||| | |||||||||| |
|
|
| T |
10217363 |
gcatgatgccagatgcaactctgaaatacctccacaaagcttattgtttccaatcattgttacatgtta--catttccaaagacaccgtttgttggtacc |
10217460 |
T |
|
| Q |
257 |
tcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttcttgaaaggt |
356 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||| |||| ||||| || |||| || |||| ||| || ||||||||||| ||||||| |
|
|
| T |
10217461 |
tccccttccaacatgttaaaagaaacattcaagtgttttaaaccagagatattctgtatgacatttggaattgatccataaaattgatttctggaaaggt |
10217560 |
T |
|
| Q |
357 |
ctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcacc |
456 |
Q |
| |
|
|||||||| | ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | ||||||||| |
|
|
| T |
10217561 |
ctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttcccttgcaaatgaaggtattccaagcttacgcattcacc |
10217660 |
T |
|
| Q |
457 |
aatggttccaggaatgccccccgacaaattattgtcagagacatctagctcatcaatatttttta |
521 |
Q |
| |
|
|||| | |||||| | || ||| |||||| ||||| |||||||||| | |||||||||||| |
|
|
| T |
10217661 |
aatgat---aggaatatcaccaaacagattattttcagaaacatctagcttaccaatatttttta |
10217722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 143 - 458
Target Start/End: Complemental strand, 10611321 - 10611006
Alignment:
| Q |
143 |
ctacccttgatagggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacac |
242 |
Q |
| |
|
||||||||||||||||||| || |||||||| || |||||||||||||||||||||| |||||||||||| ||| | ||||||||| ||| |||| |
|
|
| T |
10611321 |
ctacccttgatagggcatggtgctagatgcagctgagaaatacctccacaaagcttattgtttccaatcattgctactttggatgcatttctaaagacac |
10611222 |
T |
|
| Q |
243 |
catctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattg |
342 |
Q |
| |
|
||| ||| || ||||||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |||| ||| ||||||| |
|
|
| T |
10611221 |
catttgtcgggacctcaccttccagcatgttaaaagaaacattcaagtgttctaaacatgagatatcctgcataacatcaggaattgatccagacaattg |
10611122 |
T |
|
| Q |
343 |
atttcttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaag |
442 |
Q |
| |
|
|||| |||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||| |||||| |||| |||| |||| ||||| || |
|
|
| T |
10611121 |
atttgttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggaaggtattgttccattgaaggagttaccttgcaaaagaaggtattctaaa |
10611022 |
T |
|
| Q |
443 |
ctcatgcattcaccaa |
458 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
10611021 |
cttatacattcaccaa |
10611006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 32 - 459
Target Start/End: Complemental strand, 10564749 - 10564322
Alignment:
| Q |
32 |
tttctcttactcatccagcagatagaaataacaaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaacttgaaattatgnnnnn |
131 |
Q |
| |
|
||||| || ||||||||| |||||| || | |||||||||| |||| |||||||||| |||||||| ||||||||| |||||| ||| || | |
|
|
| T |
10564749 |
tttcttttcctcatccagtagatagttatgataaatgaaagtatgagaagaaaagaaaccacactaattatcactgccatcaacctgatctttttctgtt |
10564650 |
T |
|
| Q |
132 |
nngcacttttactacccttgatagggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcatt |
231 |
Q |
| |
|
||| ||| ||||||||||||||||||| ||||||||||| || |||||||||||||||||||| | ||||||||||| ||||| |||| | |||| |
|
|
| T |
10564649 |
ttgcatgtttcctacccttgatagggcatggtggtagatgcagctgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttacatt |
10564550 |
T |
|
| Q |
232 |
cgcaaaaacaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggt |
331 |
Q |
| |
|
|||| ||||||| | |||||| || ||||||||||||||||||||||||||||| | ||||||| || |||| || |||||||||||||| |||| | |
|
|
| T |
10564549 |
tccaaatacaccatttaatggtacatctccttccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcataacatcaggaattgat |
10564450 |
T |
|
| Q |
332 |
ccgtacaattgatttcttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaa |
431 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||| |||||||||| |||| || |||||||| ||| || |
|
|
| T |
10564449 |
ccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccatagaggacggtattgttctgttgaaggcgttcccttgcaacataa |
10564350 |
T |
|
| Q |
432 |
gatattccaagctcatgcattcaccaat |
459 |
Q |
| |
|
||||||| ||||| || ||||| ||||| |
|
|
| T |
10564349 |
gatattctaagcttatacattcgccaat |
10564322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 64 - 459
Target Start/End: Original strand, 10763652 - 10764047
Alignment:
| Q |
64 |
aaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaacttgaaattatgnnnnnnngcacttttactacccttgatagggcatgat |
163 |
Q |
| |
|
|||||||||| |||| |||||||||| ||| ||||||||||||||||||||| |||| || || ||| |||| ||||||||| |||||||||| |
|
|
| T |
10763652 |
aaatgaaagtatgagaagaaaagaaaccacgctaactatcactgctatcaacctgaacttgtgtcgttttgcatgtttaatacccttgacagggcatgat |
10763751 |
T |
|
| Q |
164 |
ggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacaccatctgttggtacctcacctt |
263 |
Q |
| |
|
|||||||| | | |||||||||||||||||||| | ||||||| ||| ||||| |||||| |||| |||| || |||| ||||||||| || |||| |
|
|
| T |
10763752 |
ggtagatgtagccgggaaatacctccacaaagcttcttgtttccagtcacttctatttgggatacatttccaaatacgccatttgttggtacttcgcctt |
10763851 |
T |
|
| Q |
264 |
ccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttcttgaaaggtctaaata |
363 |
Q |
| |
|
||||||||||||||||||||||||| | |||| || || | || || |||||||||||||| |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
10763852 |
ccaacatgttaaaagaaacattcaaatattcttaaacagatatattttgcataacatcaggaattgatccagacaattgatttcttgaaaggtctaaact |
10763951 |
T |
|
| Q |
364 |
tcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaat |
459 |
Q |
| |
|
| | ||| ||||||||||||| |||||||||||||||||| ||| ||||||||||| ||| ||||| ||||| ||| | ||||||||||||| |
|
|
| T |
10763952 |
ttgaagacctttgagagaagccatagaggatggtattgttccgctgaaggagttcccttgcaattgaaggtattctaaggttgtgcattcaccaat |
10764047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 59 - 521
Target Start/End: Original strand, 10747529 - 10747991
Alignment:
| Q |
59 |
ataacaaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaacttgaaattatgnnnnnnngcacttttactacccttgatagggc |
158 |
Q |
| |
|
|||| |||||||||| |||| |||||| ||| ||||||||||||||||| | |||| |||| ||||| | ||| |||||||||||||||| |
|
|
| T |
10747529 |
ataataaatgaaagtatgagaagaaaaaaaacaacactaactatcactgcgaccaacatgaatttatggtgttttgtgtctttcctacccttgatagggc |
10747628 |
T |
|
| Q |
159 |
atgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacaccatctgttggtacctc |
258 |
Q |
| |
|
||| ||||| ||||| | ||||||||||||||||||||| ||||||||||| |||| | || | |||| |||| ||||||| | |||||||||| |
|
|
| T |
10747629 |
atggtggtaaatgcagcagcaaaatacctccacaaagcttattgtttccaatcaattctactttggttacatttccaaatacaccattttttggtacctc |
10747728 |
T |
|
| Q |
259 |
accttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttcttgaaaggtct |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||| || |||| || |||||||||||||| |||| || ||||| ||||||||||||||||| |
|
|
| T |
10747729 |
accttccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcataacatcaggaattgacccagacaatcgatttcttgaaaggtct |
10747828 |
T |
|
| Q |
359 |
aaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaa |
458 |
Q |
| |
|
|||| | | ||| | ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||| |||| ||||||| |
|
|
| T |
10747829 |
aaatgttgaagaccttcgagagaagccaaagaggatggtattgttccattgaaggagttcccttgcaggtgaaggtattctaaggctgtgcaatcaccaa |
10747928 |
T |
|
| Q |
459 |
tggttccaggaatgccccccgacaaattattgtcagagacatctagctcatcaatatttttta |
521 |
Q |
| |
|
| ||| |||||| | || || | || ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
10747929 |
ttgttgtaggaatatcaccagatagatgattctcagagacatctagccaatcaatatttttta |
10747991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 20 - 405
Target Start/End: Complemental strand, 10580725 - 10580340
Alignment:
| Q |
20 |
gatggtttttggtttctcttactcatccagcagatagaaataacaaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaacttga |
119 |
Q |
| |
|
|||| ||||| ||| || ||||| ||||| |||||| |||| |||||||||| |||| |||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
10580725 |
gatgattttttgttccttttacttatccaatagatagctataataaatgaaagtatgagaagaaaagaaaccacactgactatcatagctatcaacttga |
10580626 |
T |
|
| Q |
120 |
aattatgnnnnnnngcacttttactacccttgatagggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctat |
219 |
Q |
| |
|
||||||| | ||| |||||||||| |||||||| ||||||||| |||||||||||||| |||||||| |||| ||||||||| || ||| |
|
|
| T |
10580625 |
aattatggttttttatatgtttcctacccttgaaagggcatggtggtagatgtaactctgaaataccaccacaaagtttattgtttccaattattgctac |
10580526 |
T |
|
| Q |
220 |
atgggatgcattcgcaaaaacaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataaca |
319 |
Q |
| |
|
|| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | |||| || ||||||||| |
|
|
| T |
10580525 |
tctggttgcatttccaaagacaccatctgttggtacctcaccttccaacatgttaaaagaaacatctaagtattctaaattagagatattttgcataaca |
10580426 |
T |
|
| Q |
320 |
tcagggattggtccgtacaattgatttcttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttcc |
405 |
Q |
| |
|
|| || ||||||| |||||| ||||||||||| |||||||| | || ||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
10580425 |
tcgggatttggtccaaacaatttatttcttgaaatatctaaataccgtagacctttgagagaagcaaaagaggatggtcttgttcc |
10580340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 163 - 527
Target Start/End: Complemental strand, 10601434 - 10601082
Alignment:
| Q |
163 |
tggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacaccatctgttggtacctcacct |
262 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| || |||||||||| ||| || |||||| |||| ||||| | |||||| ||||| ||| |
|
|
| T |
10601434 |
tggtagatgcaactgtgaaattcctccacaaagcttgtaatttccaatcaatgctactctggttgcatttccaaagacaccgtttgttggcacctctcct |
10601335 |
T |
|
| Q |
263 |
tccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttcttgaaaggtctaaat |
362 |
Q |
| |
|
||||||||||| ||||| |||||||||| | || |||| ||||||| |||| |||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
10601334 |
tccaacatgtt------------caagtattctaaaccagatatattctccataacaccaggaattggtccatacaattgatttcttgaaatatctaaat |
10601247 |
T |
|
| Q |
363 |
atcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaatggt |
462 |
Q |
| |
|
|| || ||| ||||||| |||||||||||||||||||||||| |||| || ||| ||| ||||||||| ||||| ||||| | ||||||||||||| |
|
|
| T |
10601246 |
attgtagacctttgagagcagccaaagaggatggtattgttccgttgaaagaattctcttgcaaatgaaggtattctaagcttacatattcaccaatggt |
10601147 |
T |
|
| Q |
463 |
tccaggaatgccccccgacaaattattgtcagagacatctagctcatcaatattttttaacatac |
527 |
Q |
| |
|
||||| ||| |||| |||||| ||| ||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
10601146 |
tccagtaatctccccacacaaatgattctcagagacatctagccaatcaatattttttagcatac |
10601082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 234 - 472
Target Start/End: Complemental strand, 7192525 - 7192287
Alignment:
| Q |
234 |
caaaaacaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtcc |
333 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| | | || ||||| | ||||| ||| |||||||| |
|
|
| T |
7192525 |
caaagacaccttctgttggtacctcgccttccaacatgttgaaagaaacattcaagtgttctaaaactgatatattctgtagaacattaggaattggtcc |
7192426 |
T |
|
| Q |
334 |
gtacaattgatttcttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaaga |
433 |
Q |
| |
|
||||| |||||||||| |||||||||||| | || || | |||||||| ||||||||||| ||||| |||| |||||| |||| |||| || |
|
|
| T |
7192425 |
atacaaccgatttcttgacaggtctaaatattgaagacttttaactgaagccaatgaggatggtatggttccgttgaaggagtttccttgcaaaaagagg |
7192326 |
T |
|
| Q |
434 |
tattccaagctcatgcattcaccaatggttccaggaatg |
472 |
Q |
| |
|
||||| |||| |||||||| ||||||| || ||||||| |
|
|
| T |
7192325 |
tattctaagcgtatgcattcgccaatggctctaggaatg |
7192287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 254 - 472
Target Start/End: Original strand, 19606574 - 19606792
Alignment:
| Q |
254 |
acctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttcttgaaa |
353 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| ||||||| || | || || |||| |||| ||| |||| ||| ||| |||||||||| | |
|
|
| T |
19606574 |
acctctccatccaacatgttaaaagaaacattcaagtattctaaaacagaaatattttgcagaacactaggaattgatccagtcaaccgatttcttgata |
19606673 |
T |
|
| Q |
354 |
ggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattc |
453 |
Q |
| |
|
|||||||||||| | ||| | |||||||| |||||||||||||| |||| | | ||||||||||| |||| ||||||||| ||||| |||||||| |
|
|
| T |
19606674 |
ggtctaaatatcgaagacctctaagagaagctaaagaggatggtatgattccgtgaaaggagttcccttgaaaataaagatattctaagcttatgcattc |
19606773 |
T |
|
| Q |
454 |
accaatggttccaggaatg |
472 |
Q |
| |
|
|||||||||| ||| |||| |
|
|
| T |
19606774 |
accaatggtttcagaaatg |
19606792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 239 - 521
Target Start/End: Complemental strand, 10558435 - 10558153
Alignment:
| Q |
239 |
acaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtaca |
338 |
Q |
| |
|
||||| ||| |||| ||||| || |||||||||||||| ||||| |||||||||||||||| | | || || |||| || | ||| |||| ||| ||| |
|
|
| T |
10558435 |
acaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaattgatccagaca |
10558336 |
T |
|
| Q |
339 |
attgatttcttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattc |
438 |
Q |
| |
|
||||||||||||| | ||||||||||| | ||| | | | ||||||||||||| ||||| || || || ||| || |||| |||| ||| ||||| |
|
|
| T |
10558335 |
attgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtatgatttgatggaaggaatttccttgcaaaaaaaggtattc |
10558236 |
T |
|
| Q |
439 |
caagctcatgcattcaccaatggttccaggaatgccccccgacaaattattgtcagagacatctagctcatcaatatttttta |
521 |
Q |
| |
|
||||| |||||| | |||||||| |||||| | || ||||||||||| ||||||| |||||||| || ||||||||||| |
|
|
| T |
10558235 |
taagcttttgcattgatcaatggttataggaatttcaccagacaaattattctcagagaaatctagcttattaatatttttta |
10558153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 471
Target Start/End: Original strand, 10652888 - 10653125
Alignment:
| Q |
234 |
caaaaacaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtcc |
333 |
Q |
| |
|
|||| ||||| ||| | ||||| || |||||||||||||| |||||||||||||||||||||||| | | || | || | ||||| || |||||||| |
|
|
| T |
10652888 |
caaagacaccttctttcggtacttctccttccaacatgttgaaagaaacattcaagtgttctaaaactgatatactttgtagaacatttggaattggtcc |
10652987 |
T |
|
| Q |
334 |
gtacaattgatttcttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaaga |
433 |
Q |
| |
|
||||| |||||||||| | |||||||||| | ||| || || |||||||| | |||||| || ||||| |||| |||||||||| |||| ||| |
|
|
| T |
10652988 |
atacaaccgatttcttgacaagtctaaatattgaagacctttaagtgaagccaatgtggatggaatggttccgttgaacgagttcccttgcaaagaaagg |
10653087 |
T |
|
| Q |
434 |
tattccaagctcatgcattcaccaatggttccaggaat |
471 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
10653088 |
tattctaagactatgcattcaccaatggttctaggaat |
10653125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 428
Target Start/End: Original strand, 10660694 - 10660968
Alignment:
| Q |
154 |
agggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacaccatctgttggt |
253 |
Q |
| |
|
|||||||| | ||||||| | |||||||||||||||||||||||||| ||||||| ||| ||| | | |||| |||| ||||| || ||||| |
|
|
| T |
10660694 |
agggcatggttgtagatgaagctctgaaatacctccacaaagcttattgtttccagtcacaactaacctgcttacatttccaaagacaccttccattggt |
10660793 |
T |
|
| Q |
254 |
acctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttcttgaaa |
353 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||| |||| | | || ||||| | ||||| || || ||||| ||||| |||||| ||| | |
|
|
| T |
10660794 |
acctcgccttccaacatgttgaaagatacattcaagtgttttaaaactgatatattctgtagaacatttggaatcggtccagacaatcgatttcctgaca |
10660893 |
T |
|
| Q |
354 |
ggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaat |
428 |
Q |
| |
|
||||| |||| | ||| || || |||||||| ||||||||||| ||||| |||| |||||||||| ||||| |
|
|
| T |
10660894 |
agtctagatattgaagacctttaagtgaagccaatgaggatggtatggttccgttgaaagagttcccttgcaaat |
10660968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 10589031 - 10589095
Alignment:
| Q |
149 |
ttgatagggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcat |
213 |
Q |
| |
|
||||||||||||| |||||||||| |||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
10589031 |
ttgatagggcatggcggtagatgcagctctaaaactcctccacaaagcttattgtttccaatcat |
10589095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 521
Target Start/End: Original strand, 9837157 - 9837304
Alignment:
| Q |
374 |
ttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaatggttccaggaatgc |
473 |
Q |
| |
|
|||||||| ||||||| ||| ||||| ||||| | | |||||||| | || ||||| ||||| || || |||||||||||||| ||| |||||| |
|
|
| T |
9837157 |
ttgagagatgccaaagtggaaggtatggttccgtgaagagagttcccctgtaagtgaaggtattctaaacttatgcattcaccaattgttattggaatgt |
9837256 |
T |
|
| Q |
474 |
cccccgacaaattattgtcagagacatctagctcatcaatatttttta |
521 |
Q |
| |
|
| ||||||| || ||| |||||||||||||||| || ||||||||||| |
|
|
| T |
9837257 |
cacccgacagatgattttcagagacatctagcttatgaatatttttta |
9837304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 10550383 - 10550337
Alignment:
| Q |
164 |
ggtagatgcaactctgaaatacctccacaaagcttatagtttccaat |
210 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
10550383 |
ggtagatgcaactctaaaattcctccacaaagcttattgtttccaat |
10550337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 503
Target Start/End: Original strand, 10589218 - 10589385
Alignment:
| Q |
336 |
acaattgatttcttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagata |
435 |
Q |
| |
|
|||| ||||||||||| | |||||||||| | ||| |||||||| ||||||| | | ||||||||||| || ||| |||| ||||||||| || |
|
|
| T |
10589218 |
acaactgatttcttgacatgtctaaatattgaagacctttgagagatgccaaagtgaaaggtattgttccgaggaaaaggtttccttgcaaatgaaggta |
10589317 |
T |
|
| Q |
436 |
ttccaagctcatgcattcaccaatggttccaggaatgccccccgacaaattattgtcagagacatcta |
503 |
Q |
| |
|
||| ||| | ||||| || ||||||||||| |||||||| || || | || ||| ||||||||||||| |
|
|
| T |
10589318 |
ttctaagtttatgcaatccccaatggttcctggaatgccacctgagagatgattttcagagacatcta |
10589385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 10558519 - 10558470
Alignment:
| Q |
155 |
gggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtt |
204 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
10558519 |
gggcatggaggtaggtgcaagtctgaaatacctccacaaagcttattgtt |
10558470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 527
Target Start/End: Complemental strand, 10580312 - 10580232
Alignment:
| Q |
447 |
tgcattcaccaatggttccaggaatgccccccgacaaattattgtcagagacatctagctcatcaatattttttaacatac |
527 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| | ||| ||| ||||||||||||| | | |||||| |||||| ||||| |
|
|
| T |
10580312 |
tgcattcaccaatggttccaagaatgtccccaaataaacgattctcagagacatctaccccctcaatactttttagcatac |
10580232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 10604491 - 10604391
Alignment:
| Q |
15 |
caaaggatggtttttggtttctcttactcatccagcagatagaaataacaaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaa |
114 |
Q |
| |
|
|||| ||||| ||||||||||| || |||| ||| |||||| || | || ||||||| ||| |||||||| | ||||| |||||||||||||||||| |
|
|
| T |
10604491 |
caaaagatgggttttggtttcttttcctcacccaatagatagctatgataactgaaagtatgaaaagaaaagacaccacaccaactatcactgctatcaa |
10604392 |
T |
|
| Q |
115 |
c |
115 |
Q |
| |
|
| |
|
|
| T |
10604391 |
c |
10604391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 10652810 - 10652862
Alignment:
| Q |
156 |
ggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttcca |
208 |
Q |
| |
|
|||||| | ||||||| | ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
10652810 |
ggcatggttgtagatgaagctctgaaatacctccacaaagtttatcgtttcca |
10652862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 26 - 528
Target Start/End: Original strand, 17923884 - 17924386
Alignment:
| Q |
26 |
ttttggtttctcttactcatccagcagatagaaataacaaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaacttgaaattat |
125 |
Q |
| |
|
||||| |||||||| |||||| | |||||| || | |||||||||| |||| | |||||||| ||||||||||||||||||||||||| |||| || | |
|
|
| T |
17923884 |
ttttgatttctcttcctcatcatgtagatagtgatgataaatgaaagtatgagaataaaagaaaccacactaactatcactgctatcaacctgaacttgt |
17923983 |
T |
|
| Q |
126 |
gnnnnnnngcacttttactacccttgatagggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatggga |
225 |
Q |
| |
|
| ||| ||| ||||||||||||||||||| ||||||||||| | |||||||||||||||||||| | ||||||||||| ||||| |||| |
|
|
| T |
17923984 |
gttgttttgcatgtttcctacccttgatagggcatggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggt |
17924083 |
T |
|
| Q |
226 |
tgcattcgcaaaaacaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcaggg |
325 |
Q |
| |
|
|||||| |||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||| ||| |||| || |||||| ||||||| |
|
|
| T |
17924084 |
tgcatttccaaatacaccatttgtcggtacctctccttccaacatgttaaaagaaacattcaaatattccaaaaatgagatattttgcataccatcagga |
17924183 |
T |
|
| Q |
326 |
attggtccgtacaattgatttcttgaaaggtctaaatatcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttcca |
425 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||| |||| |||||||| || || |
|
|
| T |
17924184 |
attgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttccgttgaaggagttcctttgca |
17924283 |
T |
|
| Q |
426 |
aatgaagatattccaagctcatgcattcaccaatggttccaggaatgccccccgacaaattattgtcagagacatctagctcatcaatattttttaacat |
525 |
Q |
| |
|
|||||| |||||| ||||| || ||||||||||| || ||||| | || || | || ||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
17924284 |
aatgaatatattctaagcttatacattcaccaatttctctcggaatatcaccagatagatgattctcagagacatctaattcttcaatattttttaacat |
17924383 |
T |
|
| Q |
526 |
act |
528 |
Q |
| |
|
||| |
|
|
| T |
17924384 |
act |
17924386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 8e-87; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 64 - 527
Target Start/End: Complemental strand, 12931969 - 12931506
Alignment:
| Q |
64 |
aaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaacttgaaattatgnnnnnnngcacttttactacccttgatagggcatgat |
163 |
Q |
| |
|
|||||||||| |||| | |||||||| ||||||||||| ||||||||||||| |||| || || ||| ||| ||||||||||||||||||| | |
|
|
| T |
12931969 |
aaatgaaagtatgagaataaaagaaaccacactaactagcactgctatcaacctgaacttgtgttgttttgcatgtttcctacccttgatagggcatggt |
12931870 |
T |
|
| Q |
164 |
ggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacaccatctgttggtacctcacctt |
263 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| | ||||||||||| |||||| |||| |||||| |||| ||||||| ||| |||||||| |||| |
|
|
| T |
12931869 |
ggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcaagtctatttgggttgcatttccaaatacaccatttgtcggtacctctcctt |
12931770 |
T |
|
| Q |
264 |
ccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttcttgaaaggtctaaata |
363 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| || |||| || |||||| ||||||| |||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
12931769 |
ccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcataccatcaggaattgatccagacaattgatttcttgaaaggtctaaata |
12931670 |
T |
|
| Q |
364 |
tcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaatggtt |
463 |
Q |
| |
|
|| | ||| |||||| ||| ||||||||| ||||||||||| |||| |||||||| || |||||||| |||||| ||||| | ||||||||||| | |
|
|
| T |
12931669 |
tcgaagacctttgagaaaagtcaaagaggacggtattgttccgttgaaggagttcctttgcaaatgaatatattctaagcttgtacattcaccaatttct |
12931570 |
T |
|
| Q |
464 |
ccaggaatgccccccgacaaattattgtcagagacatctagctcatcaatattttttaacatac |
527 |
Q |
| |
|
| |||||| | || || | || ||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
12931569 |
ctaggaatatcaccagatagatgattctcagagacatctaatgcttcaatattttttaacatac |
12931506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 64 - 527
Target Start/End: Complemental strand, 12948334 - 12947871
Alignment:
| Q |
64 |
aaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaacttgaaattatgnnnnnnngcacttttactacccttgatagggcatgat |
163 |
Q |
| |
|
|||||||||| |||| | |||||||| ||||||||||||| ||||||||||| |||| || || ||| ||| ||||| ||||||||||||| | |
|
|
| T |
12948334 |
aaatgaaagtatgagaataaaagaaaccacactaactatccctgctatcaacctgaacttttgttgctttgcatgtttcctaccattgatagggcatggt |
12948235 |
T |
|
| Q |
164 |
ggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacaccatctgttggtacctcacctt |
263 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||| | ||||||||||| ||||| |||| |||||| |||| ||||||| ||| |||| ||| ||| |
|
|
| T |
12948234 |
ggtagatgcaggtgggaaatacctccacatagctttttgtttccaatcacttctatttgggttgcatttccaaatacaccatttgtcggtatctctccta |
12948135 |
T |
|
| Q |
264 |
ccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttcttgaaaggtctaaata |
363 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| || |||| || |||||| ||||||| |||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
12948134 |
ccaacatgttaaaagaaacattcaaatactctaaaacagagatattttgcataccatcaggaattgatccagacaattgatttcttgaaaggtctaaata |
12948035 |
T |
|
| Q |
364 |
tcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaatggtt |
463 |
Q |
| |
|
|| | ||| |||||| ||| ||||||||| ||||||||||| |||| |||||||| || |||||||| |||||| ||||| | ||||||||||| | |
|
|
| T |
12948034 |
tcgaagacctttgagaaaagtcaaagaggacggtattgttccgttgaaggagttcctttgcaaatgaatatattctaagcttgtacattcaccaatttct |
12947935 |
T |
|
| Q |
464 |
ccaggaatgccccccgacaaattattgtcagagacatctagctcatcaatattttttaacatac |
527 |
Q |
| |
|
| |||||| | || || | || ||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
12947934 |
ctaggaatatcaccagatagatgattctcagagacatctaatgcttcaatattttttaacatac |
12947871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 64 - 527
Target Start/End: Complemental strand, 12957768 - 12957305
Alignment:
| Q |
64 |
aaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaacttgaaattatgnnnnnnngcacttttactacccttgatagggcatgat |
163 |
Q |
| |
|
|||||||||| |||| | |||||||| | ||||||||||||||||||||||| |||| || || ||| ||| ||||||||||||||||||| | |
|
|
| T |
12957768 |
aaatgaaagtatgagaataaaagaaaccgcactaactatcactgctatcaacctgaacttgtgttgctttgcatgtttcctacccttgatagggcatggt |
12957669 |
T |
|
| Q |
164 |
ggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacaccatctgttggtacctcacctt |
263 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| | ||||||||||| ||||| ||| |||||| |||| ||||||| ||| |||||||| |||| |
|
|
| T |
12957668 |
ggtagatgcagatgggaaatacctccacaaagctttttgtttccaatcacttctatttggcttgcatttccaaatacaccatttgtcggtacctctcctt |
12957569 |
T |
|
| Q |
264 |
ccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttcttgaaaggtctaaata |
363 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||| || |||| || |||||| ||||||| |||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
12957568 |
ccaatatgttaaaagaaacattcaaatattctaaaacagagatattttgcataccatcaggaattgatccagacaattgatttcttgaaacgtctaaata |
12957469 |
T |
|
| Q |
364 |
tcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaatggtt |
463 |
Q |
| |
|
| | ||| ||||||||||| |||||||| |||||||||||||||| | ||||| || |||| ||| |||||| ||| | | ||||||||||| | |
|
|
| T |
12957468 |
ttgaagacctttgagagaagctaaagaggacggtattgttccattgaagatgttcctttgcaaacgaatatattctaagattgtacattcaccaatttct |
12957369 |
T |
|
| Q |
464 |
ccaggaatgccccccgacaaattattgtcagagacatctagctcatcaatattttttaacatac |
527 |
Q |
| |
|
| ||||| | || || | || ||| ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
12957368 |
ctcggaatatcaccagatagatgattctcagagacatctaaatcttcaatattttttaacatac |
12957305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 64 - 459
Target Start/End: Complemental strand, 12906880 - 12906485
Alignment:
| Q |
64 |
aaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaacttgaaattatgnnnnnnngcacttttactacccttgatagggcatgat |
163 |
Q |
| |
|
|||||||||| |||| | |||||||| |||||||||||| |||||||||||| |||| || || ||| ||| ||||||||||||| ||||| | |
|
|
| T |
12906880 |
aaatgaaagtatgagaataaaagaaaccacactaactatgactgctatcaacctgaacttgtgttgttttgcatgtttcctacccttgatagagcatggt |
12906781 |
T |
|
| Q |
164 |
ggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacaccatctgttggtacctcacctt |
263 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||| | ||||||||||| ||||| |||| || ||| |||| | ||| | ||| |||||||| |||| |
|
|
| T |
12906780 |
ggtagatgcaggtgggaaatgcctccacaaagctttttgtttccaatcaattctatttgggttgaatttccaaataaaccttttgtcggtacctctcctt |
12906681 |
T |
|
| Q |
264 |
ccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttcttgaaaggtctaaata |
363 |
Q |
| |
|
|||||||||||||||||||||| || | ||| ||| |||| || |||||| ||||||| |||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
12906680 |
ccaacatgttaaaagaaacattaaaatattccaaaaatgagatattttgcataccatcaggaattgatccagacaattgatttcttgaaaggtctaaata |
12906581 |
T |
|
| Q |
364 |
tcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaat |
459 |
Q |
| |
|
|| | ||| |||||||||||||||||||| ||||||||||| || | |||||||| || |||||||| |||||| ||||| | ||||||||||| |
|
|
| T |
12906580 |
tcgaagacctttgagagaagccaaagaggacggtattgttccgttaaaggagttcctttgcaaatgaatatattctaagcttgtacattcaccaat |
12906485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 64 - 459
Target Start/End: Complemental strand, 12899260 - 12898865
Alignment:
| Q |
64 |
aaatgaaagtgtgagcagaaaagaaatcacactaactatcactgctatcaacttgaaattatgnnnnnnngcacttttactacccttgatagggcatgat |
163 |
Q |
| |
|
|||||||||| |||| | |||||||| ||||||||||||||||||||||||| |||| || || || ||| ||||||||||||||||| | | |
|
|
| T |
12899260 |
aaatgaaagtatgagaataaaagaaaccacactaactatcactgctatcaacctgaacttgtgttgttttacatgtttcctacccttgatagggcacggt |
12899161 |
T |
|
| Q |
164 |
ggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcattcgcaaaaacaccatctgttggtacctcacctt |
263 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||| | ||||||||||| ||||| || | |||||| |||| ||||||| ||| |||||||| |||| |
|
|
| T |
12899160 |
ggtagatgcaggtgggaaatacctccacagagctttttgtttccaatcacttctatttgcgttgcatttccaaatacaccatttgtcggtacctctcctt |
12899061 |
T |
|
| Q |
264 |
ccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcagggattggtccgtacaattgatttcttgaaaggtctaaata |
363 |
Q |
| |
|
|||||||||||||||||||||| || | ||| ||| |||| || |||||| ||||||| |||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
12899060 |
ccaacatgttaaaagaaacattaaaatattccaaaaatgagatattttgcataccatcaggaattgatccagacaattgatttcttgaaaagtctaaata |
12898961 |
T |
|
| Q |
364 |
tcttaaacccttgagagaagccaaagaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaat |
459 |
Q |
| |
|
| | ||| || ||||||||||||||||| ||||||||||| |||| |||||||| || |||| ||| |||||| | ||| | ||||||||||| |
|
|
| T |
12898960 |
ttgaagacctttaagagaagccaaagaggacggtattgttccgttgaaggagttcctttgcaaaagaatatattctatgcttgtacattcaccaat |
12898865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 31467697 - 31467739
Alignment:
| Q |
80 |
agaaaagaaatcacactaactatcactgctatcaacttgaaat |
122 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31467697 |
agaaaagaaaccacactaactatcactgctatcaacttgaaat |
31467739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 31467856 - 31467907
Alignment:
| Q |
239 |
acaccatctgttggtacctcaccttccaacatgttaaaagaaacattcaagt |
290 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
31467856 |
acaccttccgttggtacctcgccttccaacatgttaaaagatacattgaagt |
31467907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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