View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_23 (Length: 502)
Name: NF19757_low_23
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 253 - 477
Target Start/End: Original strand, 36699369 - 36699589
Alignment:
| Q |
253 |
agttacatgaatatttatgaatgatgtactttt-atacgggattaagatacgatctcaannnnnnnnnnnnacaaaacaatctcaaattttaattattca |
351 |
Q |
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| T |
36699369 |
agttacatgaatatttatgaatgatgtactttttatatgggattaagatacgatctcaatttttattttttacaatacaatctcaaattttaattattca |
36699468 |
T |
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| Q |
352 |
aataacactactcccttttattcaagctaagtnnnnnnnnnnnnnntgcaacttccgttcaagttacaacaacaaaataacacgagcattaagttgttaa |
451 |
Q |
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| T |
36699469 |
aataacactactcctttttattcaagctaag-----aaaaaaataatgcaacttccgtacaaattacaacaacaaaataacacgagcattaagttgttaa |
36699563 |
T |
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| Q |
452 |
aatacgaaaattttgaaagtttcaaa |
477 |
Q |
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| T |
36699564 |
aatacgaaaattttgaaagtttcaaa |
36699589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 36699109 - 36699238
Alignment:
| Q |
11 |
cacagactattaaatattttaaaactttgatcaaacnnnnnnnngtcttttccttttgaaaaggaaaaaatagagataatctttaatggaataaatccta |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36699109 |
cacacactattaaatattttaaaactttgatcaaacttttttttgtcttttcctttttaaaaggaaaaaattgagataatctttaatggaataaatccta |
36699208 |
T |
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| Q |
111 |
accctaataaagcacgatacacaagatcat |
140 |
Q |
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| T |
36699209 |
accctaataaagcacgatacacaagatcat |
36699238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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