View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_26 (Length: 488)
Name: NF19757_low_26
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 15 - 488
Target Start/End: Complemental strand, 30185403 - 30184927
Alignment:
| Q |
15 |
aaaatcaaccggcagcaaataatgatgcttttgcctgtaaaaacccattacacat---acgcacgcagataattaatcaaaacatagtgtccacaaagaa |
111 |
Q |
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| T |
30185403 |
aaaagcaaccggcagcaaataatgatgcttttgcctgtaaaaacccattacacatcatacgcacgcagataattaatcaaaacatagtgtccacaaagaa |
30185304 |
T |
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| Q |
112 |
gtttggctaaacaataaagaactcaagaaacgaaaattaggagaatattccaacacaatcaacctccttgtttataaaatgaaaaataaaacacaatttc |
211 |
Q |
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| T |
30185303 |
gtttggctaaacaataaagaactcaagaaacgaaaattaggagaatattccaacacaatcaacctccttgtttataaaatgaaaaataccacacaatttc |
30185204 |
T |
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| Q |
212 |
caataattatcaaaccactccagtataacctcgtatgtcaaattaaaattgcagtttctcaattgcaatataattgcataattttttaaaatatgaagnn |
311 |
Q |
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| T |
30185203 |
caataatcatcaaaccactccagtataacctcgtatgtcaaattaaaattgcagtttctcaattgcaatatgattgcataattttttaaaatatgaagaa |
30185104 |
T |
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| Q |
312 |
nnnnnncatgaccggctatttaaagtgacataatgatatatgcacacataataatacgtaaatgggagatattagtgagaatgatttagacatctagaac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30185103 |
aaaaaacatgaccggctatttaaagtgacataatgatatatgcacacataataatacgtaaatgggagatattagtgagaatgatttagacatctagaac |
30185004 |
T |
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| Q |
412 |
aacagcaacactacaagacactaatcttacctcagaatcatgaggagaaacaagggtggaaagtatcaagtatcgta |
488 |
Q |
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| T |
30185003 |
aacagcaacactacaagacactaatcttacctcagaatcatgaggagaaacaagggtggaaagtatcaagtatcgta |
30184927 |
T |
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