View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_3 (Length: 810)
Name: NF19757_low_3
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 681; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 13 - 794
Target Start/End: Original strand, 6802333 - 6803115
Alignment:
| Q |
13 |
aaaatataacacgtaacattattcaaaatataacgtctagagttaacacttatttttcataaaaa-cataattcacatagaatccaaataaaatgcatat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
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| T |
6802333 |
aaaatataacacgtaacattattcaaaatataacgtcaagagttaacacttatttttcataaaaaacataattc-cataaaatccaaataaaatgcatat |
6802431 |
T |
|
| Q |
112 |
gacaggagagaacccattcaatcaatattaagaaaacgagagccacaagaccaaccatctgtccaattcaacaaaaccaaaaagtagaataagtgcctaa |
211 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6802432 |
gactggagagaacccattcaatcaatattaagaaaacgagggccacaagaccgactatctgtccaattcaacaaaaccaaaaagtagaataagtgcctac |
6802531 |
T |
|
| Q |
212 |
tgcttatcatgaaaagaatctattgaaaggtatgtcttccgacattattgcatcctcatcttcatctgaacgaggtgatggaagatctgtcgaaggaagg |
311 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |
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| T |
6802532 |
tgcttatcatgaaaagaatccattgaaaggtatgtcttccgacattattgcatcctcatcttcatctgaacgaggtaatgaaagatccgtcgaaggaagg |
6802631 |
T |
|
| Q |
312 |
atgatcattgtaggggatggtcccacatgaacaataaactttattgaaggaag-gattgggcaaaatccctaaaaggttggaccttcctttcttgatcta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6802632 |
atgatcattgtaggggatggtcccacatgaacaataaactttattggaggaagcgattgggcaaaatccctaaaaggttggaccttcctttcttgatcta |
6802731 |
T |
|
| Q |
411 |
atctctttatacaacgtaacaatgaatcatacttcgcaggagtggacataagatgacaagtagaagacttcgttctcttcttcataacataggtcatctt |
510 |
Q |
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| T |
6802732 |
atctctttatacaacgtaacaatgaatcatacttcgcaggagtggacataagatgacaagtagaagacttcgttctcttcttcataacatgggtcatctt |
6802831 |
T |
|
| Q |
511 |
ggacctatcatatagcttgaaggcagacataccgaaacaatgacaaaaccaatcaaacatatttctctagaattgactgcatcaatcatgttcaaatgtc |
610 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6802832 |
ggatctatcatatagcttgaaggcagacataccgaaacaatgacaaaaccaatcaaacatatttctctagaattgactgcatcaatcatgttcaaatgtc |
6802931 |
T |
|
| Q |
611 |
acgttgtgtga-cccccgagctaagaagccaattcatagcattccataatcccaacgcccacctttaatgaacaactaatttcggatacatctaacctaa |
709 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
6802932 |
acgttgtgtgaccccccgagctaagaagccaattcatagcattccataatcccaacgctcacc-ttaatgaacaactaatttcggatacatctaacctaa |
6803030 |
T |
|
| Q |
710 |
tagaactgtaataaaatcaccatcggaaccaagatccatggacagagcgaccatatttagttatgttcattgatcgatgaaaact |
794 |
Q |
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| T |
6803031 |
tagaactgtaataaaatcaccatcggaaccaagatccatggatagagcgaccatatttagttatgttcattgatcgatgaaaact |
6803115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 638 - 732
Target Start/End: Original strand, 4796294 - 4796387
Alignment:
| Q |
638 |
ccaattcatagcattccataatcccaacgcccacctttaatgaacaactaatttcggatacatctaacctaatagaactgtaataaaatcaccat |
732 |
Q |
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|||||| | |||||||||||| |||||||| |||| | ||| ||||||||||| ||||| |||||||||| ||||| |||||||||||||||||| |
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| T |
4796294 |
ccaattgaaagcattccataaccccaacgctcaccgt-aataaacaactaattccggatgcatctaacctgatagagctgtaataaaatcaccat |
4796387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 541
Target Start/End: Original strand, 46613860 - 46614009
Alignment:
| Q |
392 |
accttcctttcttgatctaatctctttatacaacgtaacaatgaatcatacttcgcaggagtggacataagatgacaagtagaagacttcgttctcttct |
491 |
Q |
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|||||| ||||||||| |||||||| ||||||| ||||| | || | |||| || || || ||||| ||||||||||| ||||||| || |||||| |
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| T |
46613860 |
accttcttttcttgatttaatctctctatacaatgtaacgacgagctcttcttctaagaagagggcataaaatgacaagtagcagacttcattatcttct |
46613959 |
T |
|
| Q |
492 |
tcataacataggtcatcttggacctatcatatagcttgaaggcagacata |
541 |
Q |
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||||||| || ||| ||| |||||||||||| ||||||||| ||||| |
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| T |
46613960 |
tcataaccggggcaatcatggtcctatcatatagtttgaaggcaaacata |
46614009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 45299094 - 45299138
Alignment:
| Q |
388 |
ttggaccttcctttcttgatctaatctctttatacaacgtaacaa |
432 |
Q |
| |
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||||||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
45299094 |
ttggaccttcctttcttgatctaatttctctatagaacgtaacaa |
45299138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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