View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_33 (Length: 433)
Name: NF19757_low_33
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 786319 - 785915
Alignment:
| Q |
18 |
ggtacaatgttatatgatttggtgctaacttatcaagtgttctaactttccatagaacaccatgtgagtttgtatatgctgtccataatatctatctatg |
117 |
Q |
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| T |
786319 |
ggtacaatgttatatgatttggtgctaacttatcaagtgttctaactttccatagaacaccatgtgagtttgtatatgctgtccataatatctat----g |
786224 |
T |
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| Q |
118 |
atgatattgtgtggactcatgtcttgagaggccaaccccctttgttgatctttcagtaaaatcatcagttttctttagccatgcttgcacacttcctcct |
217 |
Q |
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| T |
786223 |
atgatattgtgtggactcatgtcttgagaggccaaccccctttgttgatctttcagtaaaatcatcagttttctttagccatgcttgcacacttcctcct |
786124 |
T |
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| Q |
218 |
atactttgttttgccgaaagtggctaaatctttgcccaaatgcatacacaaaccaaaagtgaagccaaccatttccttttccatctctaccaaatccaaa |
317 |
Q |
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| T |
786123 |
atactttgttttgccgaaagtggctaaatctttgcccaaatgcatacacaaaccaaaagtgaagccaaccatttccttttccatctctaccaaatccaaa |
786024 |
T |
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| Q |
318 |
actttt------gcctcaaagaaatcaatcataaacatatcccatggttacaaaggtttaccaatagtgtctatatattagaaaccaaaatcaaaggcat |
411 |
Q |
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| T |
786023 |
acttttgccaaagcctcaaagaaatcaatcataaacatatcccatggttacaaaggtttaccaatagtgtctatatattagaaaccaaaatcaaaggcat |
785924 |
T |
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| Q |
412 |
tgagtagaa |
420 |
Q |
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| T |
785923 |
tgagtagaa |
785915 |
T |
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