View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_34 (Length: 432)
Name: NF19757_low_34
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 36030168 - 36030517
Alignment:
| Q |
1 |
atggtgacatgagaatgaatgataaatattgttttgaaagcttggattcaatttcacgtttctcatcctaatttatgtttggtgtcactt---------- |
90 |
Q |
| |
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| T |
36030168 |
atggtgacatgagaatgaatgataaatattgttttgaaagcttggattcaatttcacgtttctcatcctaatttatgtttggtgtaacttgagatgtaat |
36030267 |
T |
|
| Q |
91 |
----tggttttgacatgttggtgtcttttagtactattaacacctcattattcctatctatcaaattactagggtgaacatttttaacacgacaaatgga |
186 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
36030268 |
caattggttttgacatgtttgtgtcttttagtactattaacacctcattattcctatctatcaatttactagggtgaacatttttaacacgacaaatgaa |
36030367 |
T |
|
| Q |
187 |
tgaattctccattgggtggaaagggagatccttctataaggaatgatcagattcttcatcggtaaggtcttcccaaaactttggcagaatggnnnnnnnn |
286 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36030368 |
tgaattctccattgggtggaaagagagatccttctataaggaatgatcagattcttcatcggtaaggtcttcccaaaactttggcagaatggtttttttt |
36030467 |
T |
|
| Q |
287 |
nnaagacattggctgaatggttttaaaacacaaattatgcataaattaca |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36030468 |
ttaagacattggctgaatggttttaaaacacaaattatgcataaattaca |
36030517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 334 - 416
Target Start/End: Original strand, 36030696 - 36030779
Alignment:
| Q |
334 |
acactcgcttagcaaatggatgtttcttcaaaggaacataact-aacaaatcatccataaggttattcaaccaccataaatttg |
416 |
Q |
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| T |
36030696 |
acactcgcttagcaaatggatgtttcttcaaaggaacataactaaacaaatcatccataaggttattcaaccaccataaatttg |
36030779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 45348316 - 45348175
Alignment:
| Q |
136 |
attcctatctatcaaattactagggtgaacatttttaacacgacaaatggatgaattctccattgggtggaaagggagatccttctataaggaatgatca |
235 |
Q |
| |
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||||||||| ||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |||| |||||||| |||| |
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| T |
45348316 |
attcctatccttcagattactgtggtgaacatttttaacaggacaaatggatgagttctccattgggtggaaagtgagatcattctctaaggaattatca |
45348217 |
T |
|
| Q |
236 |
gattcttcatcggtaaggtcttcccaaaactttggcagaatg |
277 |
Q |
| |
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||||||||||| | ||||||| | ||| |||||||||||||| |
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| T |
45348216 |
gattcttcatccgcaaggtctccgcaagactttggcagaatg |
45348175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 45357795 - 45357654
Alignment:
| Q |
136 |
attcctatctatcaaattactagggtgaacatttttaacacgacaaatggatgaattctccattgggtggaaagggagatccttctataaggaatgatca |
235 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |||| |||||||| |||| |
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| T |
45357795 |
attcctatccttcagattactgtggtgaacatttttaacaggacaaatggatgagttctccattgggtggaaagtgagatcattctctaaggaattatca |
45357696 |
T |
|
| Q |
236 |
gattcttcatcggtaaggtcttcccaaaactttggcagaatg |
277 |
Q |
| |
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||||||||||| | ||||||| | ||| |||||||||||||| |
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| T |
45357695 |
gattcttcatccgcaaggtctccgcaagactttggcagaatg |
45357654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 278
Target Start/End: Complemental strand, 36420643 - 36420542
Alignment:
| Q |
177 |
gacaaatggatgaattctccattgggtggaaagggagatccttctataaggaatgatcagattcttcatcggtaaggtcttcccaaaactttggcagaat |
276 |
Q |
| |
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||||||| ||||||||||||| | ||||||||| || ||||||| ||||| | ||||| ||||||||| |||||||| ||||| ||||||||||||| |
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|
| T |
36420643 |
gacaaatagatgaattctccactaggtggaaagctagctccttctctaaggtagtatcagtttcttcatcaataaggtctccccaagactttggcagaat |
36420544 |
T |
|
| Q |
277 |
gg |
278 |
Q |
| |
|
|| |
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|
| T |
36420543 |
gg |
36420542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 136 - 277
Target Start/End: Original strand, 45119693 - 45119833
Alignment:
| Q |
136 |
attcctatctatcaaattactagggtgaacatttttaacacgacaaatggatgaattctccattgggtggaaagggagatccttctataaggaatgatca |
235 |
Q |
| |
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||||||||| ||| ||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||||| || ||| |||| |||||||| |||| |
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| T |
45119693 |
attcctatccttcagattactatggtgaacatttttaacaggacaa-tggatgagttctccattgggtggaaagtgaaatcattctctaaggaattatca |
45119791 |
T |
|
| Q |
236 |
gattcttcatcggtaaggtcttcccaaaactttggcagaatg |
277 |
Q |
| |
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||||||||||| | ||||||| ||||| |||||||||||||| |
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| T |
45119792 |
gattcttcatcagcaaggtctccccaagactttggcagaatg |
45119833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 15340263 - 15340202
Alignment:
| Q |
211 |
gagatccttctataaggaatgatcagattcttcatcggtaaggtcttcccaaaactttggca |
272 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||| | ||||||| ||||||||||||||| |
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| T |
15340263 |
gagatccttctctaaggaatgatcaatttcttcatcagcaaggtctccccaaaactttggca |
15340202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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