View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_37 (Length: 414)
Name: NF19757_low_37
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 43079135 - 43078735
Alignment:
| Q |
1 |
catgtacagttaaaattaaggacaaatatctttttccattnnnnnnnncgccaagacacaagttgttgagaaaatgctattatgtgcattttagttttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43079135 |
catgtacagttaaaattaaggacaaatatctttttccattaaaaaaaacgccaatacacaagttgttgagaaaatgctattatgtgcattttagttttac |
43079036 |
T |
|
| Q |
101 |
tactaaatttatgaatgcaatgagtcatgagaatccggagttcagtctggggtaggtaaagtctcatcaagaattgaactcaggttctcttctacatttt |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
43079035 |
tactatatttatgaatgcaatgagtcatgagaatccggagttcagtatgggataggtaaagtctcatcaagaattgaagtcaggttctcttctacaattt |
43078936 |
T |
|
| Q |
201 |
gtcattgatggagcttattcatttaata------tatacataaaaaattggtcacatgagaaaatcattctcatttcctcttaattcaaaagaaagaatt |
294 |
Q |
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| T |
43078935 |
gtcattgatggagcttattcatttaatatatatatatacataaaaaattggtcacatgagaaaatcaatctcatttcctctcaattcaaaagaaagaatt |
43078836 |
T |
|
| Q |
295 |
aatccactcagatccatcaacataattgagtgaaataaatggtttagcctcctcatcagtgagttcccttgaccatgctaccctccctgcatagcttgct |
394 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43078835 |
aatccactcagacccatcaacataattgagtgaaataaatggtttagcctcctcatcagtgagttcccttgaccatgctaccctccctgcatagcttgct |
43078736 |
T |
|
| Q |
395 |
c |
395 |
Q |
| |
|
| |
|
|
| T |
43078735 |
c |
43078735 |
T |
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Back To:
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 33962419 - 33962491
Alignment:
| Q |
323 |
agtgaaataaatggtttagcctcctcatcagtgagttcccttgaccatgctaccctccctgcatagcttgctc |
395 |
Q |
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||||||| ||| ||| |||| || |||||||||||||| |||||||||| ||| ||||||||| | ||||||| |
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| T |
33962419 |
agtgaaagaaaaggtctagcttcttcatcagtgagttctcttgaccatgatactctccctgcaaaacttgctc |
33962491 |
T |
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