View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_38 (Length: 413)
Name: NF19757_low_38
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_38 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 4 - 397
Target Start/End: Complemental strand, 28423386 - 28422993
Alignment:
| Q |
4 |
atgtacatgtcttagaatacttgcaccaatagattttgtgcccacatgatctagtgttcgaccaaagagagtacacaaacgcctactagaatacttcatt |
103 |
Q |
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| T |
28423386 |
atgtacatgtcttagaatacttgcaccaatagattttgtgcccacatgatctagtgttcgaccaaagagagtacacaaacgcctactagaatacttcatt |
28423287 |
T |
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| Q |
104 |
agctgtcatttacttaccgtgttggcatttaattgtttgaatcttttcctctttctaatttcaagaaccttatagttatggttttgtactcttacaggat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28423286 |
agctgtcatttacttaccgtgttggcatttaattgtttgaatcttttcctctttctaatttcaagaaccttatagttatggttttgtactcttacaggat |
28423187 |
T |
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| Q |
204 |
ggtaatgaaataaaataaggcagcaaataatattatttagattattatatttcattttgatttgctnnnnnnnnntattatttagattatttccgtctct |
303 |
Q |
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| T |
28423186 |
ggtaatgaaataaaataaggcagcaaataatattatttagattattatatttcattttgatttgctaaaaaaaaatattatttagattattttcgtctct |
28423087 |
T |
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| Q |
304 |
ctannnnnnnctaaccctaccgtccatcaacataccttagcagttaagttgtataatagtttttagggttacataagttttttatccctataaa |
397 |
Q |
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| T |
28423086 |
ctatttttttctaaccctaccgtccatcaacataccttagcagttaagttgtataatagtttttagggttacataagttttttatccctataaa |
28422993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 31290433 - 31290627
Alignment:
| Q |
52 |
atctagtgttcgaccaaagagagtacacaaacg-cctactagaatacttcattagctgtcatttacttaccgtgttggcatttaattgtttgaatctttt |
150 |
Q |
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| T |
31290433 |
atctagtgttggaccaaagagagcacacaaacgtcctaatagaatatttcatgagttgtaatttagttatcgttttggcacccaataatttgaatatttt |
31290532 |
T |
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| Q |
151 |
cctctttctaatttcaagaaccttatagttatggttttgtactcttacaggatggtaatgaaataaaataaggcagcaaataatattatttagatt |
246 |
Q |
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| T |
31290533 |
tctcttt-taatttcaaaaacattgtagttatggttttatactctaatataatggtaatgaaatgaaataaggcagaaaataattatatttagatt |
31290627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 6120293 - 6120385
Alignment:
| Q |
156 |
ttctaatttcaagaaccttatagttatggttttgtactcttacaggatggtaatgaaataaaataaggcagcaaataatattatttagattat |
248 |
Q |
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| T |
6120293 |
ttctaatttcaagaaccttgtagtaatggctttgtactctaagatgatggtaatgaaatcaaataagatagtgaataatatcattaagattat |
6120385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 6113401 - 6113467
Alignment:
| Q |
156 |
ttctaatttcaagaaccttatagttatggttttgtactcttacaggatggtaatgaaataaaataag |
222 |
Q |
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| T |
6113401 |
ttctaatttcaagaaccttgtagtaatggctttgtactctaagatgatggtaatgaaatcaaataag |
6113467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 6069057 - 6069134
Alignment:
| Q |
159 |
taatttcaagaaccttatagttatggttttgtactcttacaggatggtaatgaaataaaataaggcagcaaataatat |
236 |
Q |
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| T |
6069057 |
taatttcaagaaccttgtagtaatgcctttgtactctaagatgatgttaatgaaatgaaataagatagcaaataatat |
6069134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 6091355 - 6091275
Alignment:
| Q |
156 |
ttctaatttcaagaaccttatagttatggttttgtactcttacaggatggtaatgaaataaaataaggcagcaaataatat |
236 |
Q |
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| T |
6091355 |
ttctaatttcaagaaccttgtagtaatggctttggactctaagatgatggtaatgaaatcgaataagatagtaaataatat |
6091275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 23301353 - 23301450
Alignment:
| Q |
148 |
tttcctctttctaatttcaagaaccttatagttatggttttgtactcttacaggatggtaatgaaataaaataaggcagcaaataatattatttagatt |
246 |
Q |
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| T |
23301353 |
tttccactttataagttcaaaaactttgtagttatgaatttgtactataaaag-atggtaatgaaataaaataatccagtaattaatattatttagatt |
23301450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 29490022 - 29490111
Alignment:
| Q |
153 |
tctttctaatttcaagaaccttatagttatggttttgtactcttacaggatggtaatgaaataaaataaggcagcaaataatattattta |
242 |
Q |
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| T |
29490022 |
tctttctaattttatgaaccatatagttatggctttgtactctaagattatgatattgaaatgaaataaggcagcaaataatcttattta |
29490111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 7235797 - 7235851
Alignment:
| Q |
186 |
tttgtactcttacaggatggtaatgaaataaaataaggcagcaaataatattatt |
240 |
Q |
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| T |
7235797 |
tttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatt |
7235851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 32607701 - 32607654
Alignment:
| Q |
201 |
gatggtaatgaaataaaataaggcagcaaataatattatttagattat |
248 |
Q |
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| T |
32607701 |
gatggtaatgaaatgaaatatgacaacaaataatattatttagattat |
32607654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 103156 - 103083
Alignment:
| Q |
173 |
ttatagttatgg-ttttgtactcttacaggatggtaatgaaataaaataaggcagcaaataatattatttagat |
245 |
Q |
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| T |
103156 |
ttatagttatggattttgtactctaagatgatggtaatcaaatgaaataagaaataaaataatattatttagat |
103083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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