View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_39 (Length: 410)
Name: NF19757_low_39
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_39 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 26722908 - 26723316
Alignment:
| Q |
1 |
tgattttgtcaatcaatcttggacaagaaagctactgcagtagtcttggtcgatgattatggcaacatgtgtgggattgcatacttatttatgcatcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722908 |
tgattttgtcaatcaatcttggacaagaaagctactgcagtagtcttggtcgatgattatggcaacatgtgtgggattgcatacttatttatgcatcaag |
26723007 |
T |
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| Q |
101 |
accatataaccggtggaagtggatggttgaggcacgattctatagaaagttctcctgtcaagatcggtgatcctgttgtttggaaaaatgagactttgtt |
200 |
Q |
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| T |
26723008 |
accatataaccagtggaagtggatggttgaggcacgattctatagaaagttctcctgtcaagatcggtgatcctgttgttgggaaaaatgagactttgtt |
26723107 |
T |
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| Q |
201 |
ttactgtgaggtgttactagaattaaagaaatatatttttgagtcgactatgttgtgaattttggtttagctatttctatttcaagtattgggactatct |
300 |
Q |
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| T |
26723108 |
ttactgtgaggcgttactagaattaaagaagtatatttttgagtcgactatgttgtgaattttggtttagctatttctatttcgagtattgggactatct |
26723207 |
T |
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| Q |
301 |
attttgttactatacttcaggaaaagtatagttttgagtcgactatgttgtcaattttggtttagaagtttctatttcgaatatcagactatctatttta |
400 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26723208 |
-ttttgttactagactttaggaaaagtatagttttgagtcgactatgttgtcaattttggtttagaagtttctatttcgaatatcagactatctatttta |
26723306 |
T |
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| Q |
401 |
ctaaagcatt |
410 |
Q |
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| T |
26723307 |
ttaaagcatt |
26723316 |
T |
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Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 232 - 410
Target Start/End: Original strand, 2987880 - 2988060
Alignment:
| Q |
232 |
tatatttttgagtcgactatgttgtgaattttggtttagctatttctatttcaagtattgggactatctattttgttactatacttcaggaaaagtatag |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||||| |
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| T |
2987880 |
tatatttttgagtcgactatgttgtgaattttggtttagttatttctatttagagtatcgagactatctattttgttactagacttcaggaaaagtatag |
2987979 |
T |
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| Q |
332 |
ttttgagtcgactatgttgtcaattttggtttagaagtttctatttcgaatatcag--actatctattttactaaagcatt |
410 |
Q |
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| T |
2987980 |
ttttgagtcgattatgttgtcaattttggtttagaagtttctatttcgagtatcagaaactatctattttattaaagcatt |
2988060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 232 - 410
Target Start/End: Complemental strand, 45116498 - 45116318
Alignment:
| Q |
232 |
tatatttttgagtcgactatgttgtgaattttggtttagctatttctatttcaagtattgggactatctattttgttactatacttcaggaaaagtatag |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||||| |
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| T |
45116498 |
tatatttttgagtcgactatgttgtgaattttggtttaggtatttctatttagagtatcgagactatctattttgttactagacttcaggaaaagtatag |
45116399 |
T |
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| Q |
332 |
ttttgagtcgactatgttgtcaattttggtttagaagtttctatttcgaatatcag--actatctattttactaaagcatt |
410 |
Q |
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| T |
45116398 |
ttttgagtcgattatgttgtcaattttggtttagaagtttctatttcgagtatcagaaactatctattttattaaagcatt |
45116318 |
T |
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