View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_43 (Length: 400)
Name: NF19757_low_43
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 48 - 390
Target Start/End: Original strand, 7264679 - 7265026
Alignment:
| Q |
48 |
cattcattcaaaccttgactcatatgcatgcttctatattttccaatacatttcaccgtgtgtataggttttagcagaagcattggtt---tattccaaa |
144 |
Q |
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| T |
7264679 |
cattcattcaaaccttgactcatatgcatgcttctatattttccaagacatttcaccgtgtgtataggttttagcagaagcattggttgtttattccaaa |
7264778 |
T |
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| Q |
145 |
gttgaatatattatcgtgggaaataaacttcttgggtnnnnnnn--gttaagacacagtcctattcaaattagcaacgaaattatggattactaaaaaga |
242 |
Q |
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| T |
7264779 |
gttgaatatattatcgtgggaaataaacttcttgggtaaaaaaaaagttaagacacagtcctattcaaattagcaacgaaattatggattactaaaaaga |
7264878 |
T |
|
| Q |
243 |
agacataagtatcattatcattatgataaaatctccaaaagtaatgtttggctttggccagacagcagaaacatcatgacttaaagcatcactttgacat |
342 |
Q |
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| T |
7264879 |
agacataaggatcattatcattatgataaaatctccaaaagtaatgtttggctttggccagacaacagaaacatcatgacttaaagcatcactttgacat |
7264978 |
T |
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| Q |
343 |
attcacatactatccttttcataccaatccataacatacctgcctatg |
390 |
Q |
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| T |
7264979 |
attcacatactatccttttcataccaatccataacatacctgcctatg |
7265026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7264628 - 7264662
Alignment:
| Q |
1 |
ttcaaagttcagactgtagctacttgtacaccaca |
35 |
Q |
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| T |
7264628 |
ttcaaagttcagactgtagctacttgtacaccaca |
7264662 |
T |
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