View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_46 (Length: 393)
Name: NF19757_low_46
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 447071 - 446706
Alignment:
| Q |
13 |
aatattgggttaggctctatcactataattcataaatgcataagaagtataaaaacaatctaatcgtaagttatgtacatttttgaagatcaaacgagat |
112 |
Q |
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| T |
447071 |
aatattgggttaggctctatcactataattcataaatgcataagaagtataaaaacattctaatcgtaagttatgtacatttttgaagatcaaacgagat |
446972 |
T |
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| Q |
113 |
acatttgatactcaagttgatcaatgaagtcgatgcaacactctattccatttgcatcctaactcgccacttgaaatctcaagtagctcaaatccaaaat |
212 |
Q |
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| T |
446971 |
acatttgatactcaggttgatcaatgaagtcgatgcaacact--attccatttgcatcctaactcgccacttgaaatctcaagtagctcaaatccaaaat |
446874 |
T |
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| Q |
213 |
cttcaaactttggtacacattcatacctgaaacttcaacattcatcaatcaacacttgtctagtctgtcaataacattcaatctctcggcaatgacctga |
312 |
Q |
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| T |
446873 |
cttcaaacattggcacacattcatacctgaaacttcaacattcatcaatcaacacttgtctagtctgtcaataacattcaatctctcggcaatgacctga |
446774 |
T |
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| Q |
313 |
agtttccttgttaaacaacttcgaaatttcaaaccttgattcacgacattgttttgtagatcaatgtg |
380 |
Q |
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| T |
446773 |
agtttccttgttaaacaacttcgaaatttcaaaccttgattcacgacattgttttgtagatcaatgtg |
446706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 369
Target Start/End: Complemental strand, 1477658 - 1477576
Alignment:
| Q |
287 |
cattcaatctctcggcaatgacctgaagtttccttgttaaacaacttcgaaatttcaaaccttgattcacgacattgttttgt |
369 |
Q |
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| T |
1477658 |
catttaatctctcggcaatgacctgtaacttccgtgttaaagaacttggaaaattcaaatcttgcttcacagcgttgttttgt |
1477576 |
T |
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