View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_47 (Length: 390)
Name: NF19757_low_47
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 3 - 374
Target Start/End: Complemental strand, 591456 - 591089
Alignment:
| Q |
3 |
gaagaaccttgatgatttaaacgaatcaaatcggcatttgtagcatcgagttccttttgaagcttaaggagttgtctttgaagcacagatatagctccaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591456 |
gaagaaccttgatgatttaaacgaatcaaatcggcatttgtagcatcgagttccttttgaagcttaaggagttgtctttgaagcacagatatagctccaa |
591357 |
T |
|
| Q |
103 |
cacaaccatacactggatctttaatccttgcttcagcttcataagctagagaattcactgtatcttctctttgatggggtaaaacttcatttagaatttt |
202 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
591356 |
cacaaccatacactggatctttaatccttgcttcagcttcataagctagagaattcaccgtatcttctctttgatggggtaaaacttcatttagaatttt |
591257 |
T |
|
| Q |
203 |
gctaacattacttgcaccaaatattttgtgaacatttgcaaacttatgaggctcttctggtgggaaataaggtgcaaaaatgcaatcttggttgcatttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591256 |
gctaacattacttgcaccaaatattttgtgaacatttgcaaacttatgaggctcttctggtgggaaataaggtgcaaaaatgcaatcttggttgcatttt |
591157 |
T |
|
| Q |
303 |
cttcttagaaacttgcaagcagcacatggagaatttgagtagcttgaggccatatataatctaagcttaaat |
374 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
591156 |
cttcttagaaacttgcaagcagcacatggagaatttgagtagcttgaggcc----ataatctaagcttaaat |
591089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 3 - 355
Target Start/End: Complemental strand, 601033 - 600681
Alignment:
| Q |
3 |
gaagaaccttgatgatttaaacgaatcaaatcggcatttgtagcatcgagttccttttgaagcttaaggagttgtctttgaagcacagatatagctccaa |
102 |
Q |
| |
|
|||||||||| |||| | |||||||||||||| |||||||||||||| ||||||||||| ||| ||| |||||||| ||| || || || |||||||||| |
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| T |
601033 |
gaagaaccttcatgagtaaaacgaatcaaatcagcatttgtagcatcaagttccttttggagcctaaagagttgtccttggaggactgaaatagctccaa |
600934 |
T |
|
| Q |
103 |
cacaaccatacactggatctttaatccttgcttcagcttcataagctagagaattcactgtatcttctctttgatggggtaaaacttcatttagaatttt |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
600933 |
cacaaccatacactggatttttaatccttgcttcagcttcataagctagagaattcactgtatcttctctttgatgaggtaagacttcatttagaatttt |
600834 |
T |
|
| Q |
203 |
gctaacattacttgcaccaaatattttgtgaacatttgcaaacttatgaggctcttctggtgggaaataaggtgcaaaaatgcaatcttggttgcatttt |
302 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
600833 |
gctaacattgcttgcaccaaatattttgtgaacattgacaaatttatgaggctcttctggtgggaaataaggtgcaaaaatgcaatcttggttgcatttt |
600734 |
T |
|
| Q |
303 |
cttcttagaaacttgcaagcagcacatggagaatttgagtagcttgaggccat |
355 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
600733 |
cttcttaggaacttgcaagcagcacatggagaatttgagtagcctgaggccat |
600681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 24 - 343
Target Start/End: Original strand, 12360587 - 12360906
Alignment:
| Q |
24 |
cgaatcaaatcggcatttgtagcatcgagttccttttgaagcttaaggagttgtctttgaagcacagatatagctccaacacaaccatacactggatctt |
123 |
Q |
| |
|
||||||||||| || || |||||||| ||||||||||| ||| ||| | ||||||||| || || || || || || || |||||||| |||||||||| |
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| T |
12360587 |
cgaatcaaatcagcgttagtagcatcaagttccttttggagcctaataacttgtctttggaggactgaaatggcaccgacgcaaccataaactggatctt |
12360686 |
T |
|
| Q |
124 |
taatccttgcttcagcttcataagctagagaattcactgtatcttctctttgatggggtaaaacttcatttagaattttgctaacattacttgcaccaaa |
223 |
Q |
| |
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| |||||||| |||||||||||||| ||||| ||||||| |||||| |||||||| ||| |||||||| |||| ||| || ||||| ||||||||||| |
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| T |
12360687 |
ttatccttgcctcagcttcataagcaagagagttcactgcatcttccctttgatgtggttgcacttcattcagaagtttacttacattgcttgcaccaaa |
12360786 |
T |
|
| Q |
224 |
tattttgtgaacatttgcaaacttatgaggctcttctggtgggaaataaggtgcaaaaatgcaatcttggttgcattttcttcttagaaacttgcaagca |
323 |
Q |
| |
|
||||||||||||||||||||| || || || ||||||||||||||||| || ||||| ||||||||| | |||| || ||||| | ||||||||||||| |
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|
| T |
12360787 |
tattttgtgaacatttgcaaatttttgtggttcttctggtgggaaatatggagcaaatatgcaatctggcatgcacttccttctcaaaaacttgcaagca |
12360886 |
T |
|
| Q |
324 |
gcacatggagaatttgagta |
343 |
Q |
| |
|
|||||||| ||||| ||||| |
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| T |
12360887 |
gcacatggtgaattcgagta |
12360906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 286
Target Start/End: Complemental strand, 43583483 - 43583245
Alignment:
| Q |
48 |
tcgagttccttttgaagcttaaggagttgtctttgaagcacagatatagctccaacacaaccatacactggatctttaatccttgcttcagcttcataag |
147 |
Q |
| |
|
|||||||||||||||||| | | | ||||||||| || | ||| || ||||| ||||| ||||| |||||||| ||| | |||||| |||||||||| |
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| T |
43583483 |
tcgagttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcataag |
43583384 |
T |
|
| Q |
148 |
ctagagaattcactgtatcttctctttgatggggtaaaacttcatttagaattttgctaacattacttgcaccaaatattttgtgaacatttgcaaactt |
247 |
Q |
| |
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| || || ||||| | ||| || ||||| || || | || |||||| |||| || | ||||| || ||||||||||||||||| || |||||||| || |
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| T |
43583383 |
caagggagttcacagcatcctccctttggtgagggagaagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaattt |
43583284 |
T |
|
| Q |
248 |
atgaggctcttctggtgggaaataaggtgcaaaaatgca |
286 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||| |
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| T |
43583283 |
ttgaggctcttctggagggaagtaaggtgcaaagatgca |
43583245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 32036338 - 32036399
Alignment:
| Q |
114 |
actggatctttaatccttgcttcagcttcataagctagagaattcactgtatcttctctttg |
175 |
Q |
| |
|
||||| ||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
32036338 |
actgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttg |
32036399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 34675510 - 34675370
Alignment:
| Q |
32 |
atcggcatttgtagcatcgagttccttttgaagcttaaggagttgtctttgaagcacagatatagctccaacacaaccatacactggatctttaatcctt |
131 |
Q |
| |
|
||||||||| | || ||| |||||||||||||| | | | |||||| ||||| | ||| ||||| |||||||||||||| || |||||| | | | | |
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|
| T |
34675510 |
atcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataaacaggatctctcacacgt |
34675411 |
T |
|
| Q |
132 |
gcttcagcttcataagctagagaattcactgtatcttctct |
172 |
Q |
| |
|
|| || ||||||||||| || |||||||||| ||||||||| |
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|
| T |
34675410 |
gcctcggcttcataagcaagggaattcactgcatcttctct |
34675370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 341
Target Start/End: Complemental strand, 15262718 - 15262582
Alignment:
| Q |
205 |
taacattacttgcaccaaatattttgtgaacatttgcaaacttatgaggctcttctggtgggaaataaggtgcaaaaatgcaatcttggttgcattttct |
304 |
Q |
| |
|
||||||| ||||| ||||| ||| | |||||||||||||| || || |||| || ||||| |||||||||||||| || ||| | | |||||||| |
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|
| T |
15262718 |
taacattgcttgctccaaaaattctatgaacatttgcaaatttttgtggctgatcaggtggaaaataaggtgcaaatgcacattctggttggcattttcg |
15262619 |
T |
|
| Q |
305 |
tcttagaaacttgcaagcagcacatggagaatttgag |
341 |
Q |
| |
|
| |||||||||||| || |||||||| ||||||||| |
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|
| T |
15262618 |
gcgtagaaacttgcatgctgcacatggtgaatttgag |
15262582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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