View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_49 (Length: 380)
Name: NF19757_low_49
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 1973640 - 1973756
Alignment:
| Q |
1 |
gaaggtagacgtttgcgttgaattgattaacgaagaattgagtttgatgataagagatgatcttgtctgacaaccttgtcgagtgttctgggtcggagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1973640 |
gaaggtagacgtttgcgttgaattgattaacgaagaattgagtttgatgataagagatgatcttgtctgacaaccttgtcgagtgttctgggtcggagtc |
1973739 |
T |
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| Q |
101 |
gttcgaacaatggttca |
117 |
Q |
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|||||| |||||||||| |
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| T |
1973740 |
gttcgagcaatggttca |
1973756 |
T |
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Back To:
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Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 10987185 - 10987301
Alignment:
| Q |
1 |
gaaggtagacgtttgcgttgaattgattaacgaagaattgagtttgatgataagagatgatcttgtctgacaaccttgtcgagtgttctgggtcggagtc |
100 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10987185 |
gaaggtaaacgtttgtgttgaattgattaacgaagaattgagtttgataataagagatgatcttgtctgacaaccttgtcgagtgttctgggtcggagtc |
10987284 |
T |
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| Q |
101 |
gttcgaacaatggttca |
117 |
Q |
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||||||||||||||||| |
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| T |
10987285 |
gttcgaacaatggttca |
10987301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 41867435 - 41867548
Alignment:
| Q |
1 |
gaaggtagacgtttgcgttgaattgattaacgaagaattgagtttgatgataagagatgatcttgtctgacaaccttgtcgagtgttctgggtcggagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41867435 |
gaaggtagacgtttgcgttgaattgattaacgaagaattgagtttgatgataagagat---cttgtctgacaaccttgtcgagtgttctgggtcggagtc |
41867531 |
T |
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| Q |
101 |
gttcgaacaatggttca |
117 |
Q |
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||||||||||||||||| |
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| T |
41867532 |
gttcgaacaatggttca |
41867548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 43285491 - 43285607
Alignment:
| Q |
1 |
gaaggtagacgtttgcgttgaattgattaacgaagaattgagtttgatgataagagatgatcttgtctgacaaccttgtcgagtgttctgggtcggagtc |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
43285491 |
gaaggtagacgtttgcgttgaattgatgaacggagaatggagtttgttgataagagatgatcttgtccgacaacctcgtcgagtgttctgggtcggagtc |
43285590 |
T |
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| Q |
101 |
gttcgaacaatggttca |
117 |
Q |
| |
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||||| ||||||||||| |
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| T |
43285591 |
gttcgtacaatggttca |
43285607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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