View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_52 (Length: 374)
Name: NF19757_low_52
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 8026756 - 8026401
Alignment:
| Q |
1 |
ctatatataaatatcgtaaaaccgattaaccataaataagggtcgtcaaattagtagctcaaatttaagtaaatcaacattttagtcttcgaaactgatt |
100 |
Q |
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| T |
8026756 |
ctatatataaatatcgtaaaatcgattaaccataaataagagtcgtcaaattagtaactcaaatttaagtaaatcaacattttagtcttcgaaactgatt |
8026657 |
T |
|
| Q |
101 |
agcaaaatatcagcttccttttagaaattactacttatagatataatttgtattctaccctataacatgatatgacttaaacaaattcatttggttgcgt |
200 |
Q |
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| T |
8026656 |
agcaaaatatcagcttccttttagaaattactacttatagatataatttgtattctaccctataacatgacatgacttaaacaaaatcatttgcttgcgt |
8026557 |
T |
|
| Q |
201 |
gacaatttatagtcaaaagaactaatgtatctcaaataattagcgtcccacacaattcaaattgccaatagtttgtactcaaatatattttgacagttgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8026556 |
gacaatttatagtcaaaagaactaatgtatctcaaataattagcgtcccacacaattcaaattgccaatagtttgtactcaaatatattttgacacttgt |
8026457 |
T |
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| Q |
301 |
gtgtgtgggtttaaaaaattatataaatcgtgatttcaaacatcgcaacctcacat |
356 |
Q |
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| T |
8026456 |
gtgtgtctgtttaaaaaattatataaatcatgatttcaaacatagcaacctcacat |
8026401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 135 - 340
Target Start/End: Complemental strand, 8037853 - 8037647
Alignment:
| Q |
135 |
ttatagatataatttgtattctaccctataacatgatatgacttaaacaaattcatttggttgcgtg-acaatttatagtcaaaagaactaatgtatctc |
233 |
Q |
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| T |
8037853 |
ttataggtataatttgtattctaccctgtaacatgacatgacttgaacaaaatcatttgcttgcgaggacaatttatagtcaaaagaactaatgtacctc |
8037754 |
T |
|
| Q |
234 |
aaataattagcgtcccacacaattcaaattgccaatagtttgtactcaaatatattttgacagttgtgtgtgtgggtttaaaaaattatataaatcgtga |
333 |
Q |
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| T |
8037753 |
taataattagagtcccacgcaattcaaattgctgatagtttgtactcaaatatattttgacagttgtgtgtgtatgtttaaaaaattatattaatcatga |
8037654 |
T |
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| Q |
334 |
tttcaaa |
340 |
Q |
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| T |
8037653 |
tatcaaa |
8037647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 8038769 - 8038634
Alignment:
| Q |
3 |
atatataaatatcgtaaaaccgattaaccataaataagggtcg-tcaaattagtagctcaaatttaagtaaatcaacattttagtcttcgaaactgatta |
101 |
Q |
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||||||||||||| ||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||| |
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| T |
8038769 |
atatataaatatcataaaatcaattaaccataaataaggttcggtcaaattagtagctcaaatttaagtaaatgaacattttaatctttgaaacttatta |
8038670 |
T |
|
| Q |
102 |
gcaaaatatcagcttccttttagaaattactactta |
137 |
Q |
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|||||||| | |||||| ||| ||||||||||||| |
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| T |
8038669 |
acaaaatattaacttcctcttaaaaattactactta |
8038634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 114 - 298
Target Start/End: Complemental strand, 7995535 - 7995354
Alignment:
| Q |
114 |
cttccttttagaaattactacttatagatataatttgtattctaccctataacatgatatgacttaaacaaattcatttggttgcgtgacaatttatagt |
213 |
Q |
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|||| |||||||||||||| |||||| |||||||||||||||||| ||||||||| |||||||||| | ||||| |||||||||||||||||| |
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| T |
7995535 |
cttcattttagaaattactgattatagttataatttgtattctaccatataacatgg-----cttaaacaaaattatttgtttgcgtgacaatttatagc |
7995441 |
T |
|
| Q |
214 |
caaaagaactaatgtatctcaaataattagcgtcccacacaattcaaattgccaatagtttgtactcaa--atatattttgacagtt |
298 |
Q |
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| T |
7995440 |
taagagaactaatatatctctaataattagggtcccacccaattcaaattgctgatagcttgtacttaactatatattttaacagtt |
7995354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 8016801 - 8016748
Alignment:
| Q |
36 |
ataagggtc-gtcaaattagtagctcaaatttaagtaaatcaacattttagtct |
88 |
Q |
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||||||||| || ||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
8016801 |
ataagggtcagttaaattagtagctcgaatttaagtaaataaacattttagtct |
8016748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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