View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_53 (Length: 367)
Name: NF19757_low_53
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 36085735 - 36086084
Alignment:
| Q |
1 |
acaaacacaatagggaatctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaaga |
100 |
Q |
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| T |
36085735 |
acaaacacaatagggaatctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaaga |
36085834 |
T |
|
| Q |
101 |
ttcatataattagattcgaaatgatgtccaagttaacattctacatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataa |
200 |
Q |
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| T |
36085835 |
ttcatataattagattcgaaatgatgtccaagttaacattctacatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataa |
36085934 |
T |
|
| Q |
201 |
taagaaacacaaagttcaaaccaatgatcataataaaaaagagagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaa |
300 |
Q |
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| T |
36085935 |
taagaaacacaaagttcaaaccaatgatcataataaaaaagagagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaa |
36086034 |
T |
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| Q |
301 |
aatccactcaccacaagagatctcattgaaacagaatgttccttagaagt |
350 |
Q |
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| T |
36086035 |
aatccactcaccacaagagatctcattgaaacagaatgttccttagaagt |
36086084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 40730273 - 40730108
Alignment:
| Q |
1 |
acaaacacaatagggaatctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaaga |
100 |
Q |
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| T |
40730273 |
acaaacacaataggcaatctgacctcgttcatatcgtgtgccatgtttttcaaagtatccaatccttctgcaatcacatccaaaccttcatcctaaaaga |
40730174 |
T |
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| Q |
101 |
ttcatataattagattcgaaatgatgtccaagttaacattctacatataacatcatgcaaaagata |
166 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40730173 |
ttcatataattagatttgaaatgatgtccaagttaacattctacatataacatcatgcaaaagata |
40730108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 28511073 - 28511149
Alignment:
| Q |
19 |
ctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatccta |
95 |
Q |
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|||||||||||||| || || ||||||| |||||||||||||||||||||| |||||| ||||||||||| |||||| |
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| T |
28511073 |
ctgacctcattcatgtcatgcgccatgtctttcaaagtatccaatccttctgcaatcatatccaaaccttgatccta |
28511149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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