View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_54 (Length: 367)
Name: NF19757_low_54
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 357
Target Start/End: Original strand, 42130241 - 42130592
Alignment:
| Q |
15 |
agtagtgatatttaaacatcctaatttgaacaacttataagacaatttataaaactatactaaaaacaactcataagatttttataataattttttcttt |
114 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42130241 |
agtagtgatatttaaacatcttaatttgaacaacttataagacaatttataaaactatactaaaaacaactcataagatttttataataattttttcttt |
42130340 |
T |
|
| Q |
115 |
ctctcttaaccaattaacacttgattttataagttgtcattatcattactctttattttattgaagctgaattagtatgctgtaggcatctttcatatcc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42130341 |
ctctcttaaccaattaacacttgattttataagttgtcattatcattactctttattttattgaagctgaattagtatgctctaggcatctttcatatcc |
42130440 |
T |
|
| Q |
215 |
tgatgtttgattgtattgggttgacatagcttcatacttcttaaatatattttatttatttgtgcttnnnnnnntttcatttcgtgaagtttaaatcaat |
314 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
42130441 |
tgatgtttgattgtattgggttgacgtagcttcatacttcttaaatatattttatttatttgtgcttaaaaaattttcatttcatgaagtttaaatcaat |
42130540 |
T |
|
| Q |
315 |
atttctacatgt---------aactcataaattttaataattggataatatt |
357 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42130541 |
atttctacatgtaacgcataaaactcataaattttaataattggataatatt |
42130592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 32692764 - 32692651
Alignment:
| Q |
44 |
acaacttataagacaatttataaaactatactaaaaacaactcataagatttttataata-attttttctt--tctctcttaa-ccaattaacacttgat |
139 |
Q |
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|||| ||||| |||||||||||||| | |||||||||||||||| ||| ||||||| || ||||||||| |||||||||| | ||||||||||| | |
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| T |
32692764 |
acaatttatatgacaatttataaaatcacactaaaaacaactcatgagagttttatagtattttttttctttctctctcttaatcaaattaacactttgt |
32692665 |
T |
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| Q |
140 |
tttataagttgtca |
153 |
Q |
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|||||| ||||||| |
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| T |
32692664 |
tttataggttgtca |
32692651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 37814765 - 37814810
Alignment:
| Q |
73 |
actaaaaacaactcataagatttttataataattttttctttctct |
118 |
Q |
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| T |
37814765 |
actaaaaacaacttatgacaattttataataattttttctttctct |
37814810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 21763489 - 21763636
Alignment:
| Q |
10 |
tcatcagtagtgatatttaaacatcctaatttgaacaacttataagacaatttataaaactatactaaaaacaactcataagatttttataataattttt |
109 |
Q |
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|||| |||| |||||||| ||||| |||||||| |||||| ||||| ||||||||||| | | |||||||||||||||||||||||||||||||| |
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| T |
21763489 |
tcatgagtaatgatatttggacatcaaaatttgaatgacttatgtgacaacttataaaactactccataaacaactcataagatttttataataattttt |
21763588 |
T |
|
| Q |
110 |
tctt--tctctcttaacc-aattaacacttgattttataagttgtcat |
154 |
Q |
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|||| ||||||||| || |||||| |||||||||| || |||||||| |
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| T |
21763589 |
tctttctctctcttagccaaattaatacttgattttgtaggttgtcat |
21763636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 13702233 - 13702369
Alignment:
| Q |
20 |
tgatatttaaacatcctaatttgaacaacttataagacaatttataaaactatactaaaaacaactcataagatttttataataattttttctt--tctc |
117 |
Q |
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|
|||||||| |||||| ||||| |||||||||| |||| |||| ||| | ||||||||||||| || ||| ||||||||||||| |||||| |||| |
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| T |
13702233 |
tgatatttcaacatcaaaattttgacaacttatataacaacttatcaaatcacactaaaaacaacttatgagagttttataataattgtttctttctctc |
13702332 |
T |
|
| Q |
118 |
tcttaa-ccaattaacacttgattttataagttgtca |
153 |
Q |
| |
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|||||| | |||||||||| ||||||||||||||| |
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|
| T |
13702333 |
tcttaatcaaattaacactctgttttataagttgtca |
13702369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 29565520 - 29565424
Alignment:
| Q |
56 |
acaatttataaaactatactaaaaacaactcataagatttttataataatttt-ttctttctctcttaa-ccaattaacacttgattttataagttg |
150 |
Q |
| |
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|||| ||||||||| | ||| |||||||||||| ||||||||||||||||||| || | |||| |||| | |||||||| |||||||||||||||| |
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| T |
29565520 |
acaacttataaaaccacactcaaaacaactcatgagatttttataataattttcttttatctcatttaatcaaattaacatttgattttataagttg |
29565424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 232503 - 232556
Alignment:
| Q |
67 |
aactatactaaaaacaactcataagatttttataataattttttctttctctct |
120 |
Q |
| |
|
||||| |||||||| ||| || ||||||||||||||||||||||||||||||| |
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|
| T |
232503 |
aactacactaaaaagtactaatgagatttttataataattttttctttctctct |
232556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 37428812 - 37428741
Alignment:
| Q |
75 |
taaaaacaactcataagatttttataataattttttctttct--ctcttaacc-aattaacacttgatttta |
143 |
Q |
| |
|
|||||||||||||| || |||||||||| |||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
37428812 |
taaaaacaactcatgggagttttataatagttttttctttctctctcttaaccaaattaacacttaatttta |
37428741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 35554501 - 35554463
Alignment:
| Q |
83 |
actcataagatttttataataattttttctttctctctt |
121 |
Q |
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|
|||||| ||| |||||||||||||||||||||||||||| |
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| T |
35554501 |
actcatgagagttttataataattttttctttctctctt |
35554463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 2287064 - 2287163
Alignment:
| Q |
55 |
gacaatttataaaactatactaaaaacaactcataagatttttataataattt--tttctttctctcttaacc-aattaacacttgattttataagttgt |
151 |
Q |
| |
|
||||| |||||||| | ||| |||||||||| |||||||||||||||||||| || | |||| ||||||| |||||||||||| |||||||| |||| |
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|
| T |
2287064 |
gacaacttataaaatcacactcaaaacaactc-taagatttttataataatttcccttttctctcacttaaccaaattaacacttggttttataaattgt |
2287162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 7392985 - 7392892
Alignment:
| Q |
59 |
atttataaaactatactaaaaa-caactcataagatttttataataattttt-tctttctctcttaacc-aattaacacttgattttataagtt |
149 |
Q |
| |
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||||||||||||| || ||||| ||||| | |||||||||||||||||||| | | |||||||||||| |||||| | ||| ||||||||||| |
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| T |
7392985 |
atttataaaactagacaaaaaaacaactattgagatttttataataatttttctttctctctcttaacctaattaagaattggttttataagtt |
7392892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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