View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_55 (Length: 366)
Name: NF19757_low_55
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_55 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 33713510 - 33713168
Alignment:
| Q |
8 |
agattatactatgaattcgattaagggtcctagaggttcttattgttgaaatttaggcctaactcatccaaccaaaaccgacttcgtgggattgtgttag |
107 |
Q |
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| T |
33713510 |
agattgtactattaattcgattaagggtcctagaggttcttattgttgaaatttaggcctaactcatccaaccaaaaccgacttcatgggattgtgttag |
33713411 |
T |
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| Q |
108 |
gcccaaccatgacttctatgacttatgtcccctccgatctttttaatgtagatgatgcgatgattttttgcgtgggtactttatctaacttaagagagat |
207 |
Q |
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| T |
33713410 |
gcccaaccatgacttctatgacttatgtcccctccgatctttttaatgtagatgatgtgatgattttttgcgtgggtacttaatctaacttaagagagat |
33713311 |
T |
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| Q |
208 |
cttaagcaattattgattaattatgctagtgtttctggccatgtaaaaatagcaaatctactatctacgttgtccacatcagtaatatcagaagagccat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33713310 |
cttaagcaattattgattaattatgctagtgtttctggccatgtaaaaatagcaaatctactatctacgttgtccacatcagtaatatcagaagagtcat |
33713211 |
T |
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| Q |
308 |
aattgttgaacttttgtgtttctctgagacatgtttgcatata |
350 |
Q |
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| T |
33713210 |
aattgttgaacttttgtgtttctctgagacatgtttgcatata |
33713168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 349
Target Start/End: Original strand, 21252111 - 21252203
Alignment:
| Q |
255 |
aatagcaaatctactatctacgttgtccacatcagtaatatcagaagagccataattgttgaacttttgtgtttctctgagacatgtttgcatat |
349 |
Q |
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| T |
21252111 |
aatagaaaatctactatcttcgttgtcgacataagtaatatcgtaagagccaaaattgtt--tcttttgcgtttctgtgagacatgtttgcatat |
21252203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 21214360 - 21214300
Alignment:
| Q |
181 |
gggtactttatctaacttaagagagatcttaagcaattattgattaattatgctagtgtttct |
243 |
Q |
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| T |
21214360 |
gggtactttatctaacttaagaga--tcttaagcaattatttaatgattatgcaagtgtttct |
21214300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 34 - 345
Target Start/End: Original strand, 4302 - 4615
Alignment:
| Q |
34 |
gtcctagaggttcttattgttgaaatttaggcctaactcatccaaccaaaaccgacttcgtgggattgtgttaggcccaaccatgacttctatgacttat |
133 |
Q |
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| T |
4302 |
gtcctagaggttcttattgttgaaatttaggtttaactcatccttacaaaaccgactttgtggtattgtgttagactcaatcacgatttctatgacttat |
4401 |
T |
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| Q |
134 |
gtcccctccgatctttttaatgtagatgatgcgatga-ttttttgcgtgggtactttatctaacttaagagagatcttaagcaattattgattaa----t |
228 |
Q |
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| T |
4402 |
gtcccctccgatcttttttatgcagatgatgcgatgatttttttgcgtgtgtac-ttatctaacata--agagatcttaaacaattattgaataactata |
4498 |
T |
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| Q |
229 |
tatgctagtgtttctggccatgtaaaaatagcaaatctactatctacgttgtccacatcagtaatatcagaagagccataattgttgaacttttgtgttt |
328 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||| || | |||| |||| |
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| T |
4499 |
tatgctagtgtttctggccgtgtaaaaagagcaaatctactatcttcgctgtccacatcagtaatatcagaagagccaaaattgtcgatcctttgcgttt |
4598 |
T |
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| Q |
329 |
ctctgagacatgtttgc |
345 |
Q |
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| T |
4599 |
ctctgagacatgtttgc |
4615 |
T |
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