View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_56 (Length: 366)
Name: NF19757_low_56
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_56 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 19391304 - 19391655
Alignment:
| Q |
1 |
tcgagttgcataattgttgagctaacctttatacacttcgtcgatatttaattgacatttcaaaggttatgaaaatagatgagaggctactaggctaaac |
100 |
Q |
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| T |
19391304 |
tcgagttgcataattgttgagctaacctttatacacttcgtcgatatttaattgacatttcaaaggttatgaaaatagatgagaggctactaggctaaaa |
19391403 |
T |
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| Q |
101 |
ttatgacgagttagtgttagcctacgcgtcagtcacgaccaaaaattgggtcgtgacaaaaggtaattatcctttaacaacaaataaaagtattgcactc |
200 |
Q |
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| T |
19391404 |
ttatgacgagttagtgttagcctacgcgtcagtcacgaccaaaaattgggtcgtgacaaaaggtaattatcctttaacaacaaataaaagtattgcactc |
19391503 |
T |
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| Q |
201 |
aattgattaaagattattacttcaattgctgatagattgtaatttcctcagttatcaatggcaaccaattaagtgaatgtgaacattctcagcaattagc |
300 |
Q |
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| T |
19391504 |
aattgattaaagattattacttcaattgctgatagattgtaatttcctcaattatcaatggcaaccaattaagtgaatgtgaacattctcagcaattagc |
19391603 |
T |
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| Q |
301 |
--tatatatatggcctatcaaataataaaacataggtttaattgcacttttg |
350 |
Q |
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| T |
19391604 |
tatatatatatggcctatcaaataataaaacataggcttaattgcacttttg |
19391655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 16675362 - 16675413
Alignment:
| Q |
221 |
ttcaattgctgatagattgtaatttcctcagttatcaatggcaaccaattaa |
272 |
Q |
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| T |
16675362 |
ttcaattgctgacagattgtagtttcttcaattattaatggcaaccaattaa |
16675413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 17722420 - 17722322
Alignment:
| Q |
182 |
aaataaaagtattgcactcaattgattaaagattattacttcaattgctgatagattgtaatttcctcagttatcaatggcaaccaattaagtgaatgtg |
281 |
Q |
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| T |
17722420 |
aaataaaagtattgcattcaattctttaaaaatta---catcaattactgagcgattgcaatttccacaattatcaatggaaaccaattaagtcaatttg |
17722324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 19023649 - 19023551
Alignment:
| Q |
182 |
aaataaaagtattgcactcaattgattaaagattattacttcaattgctgatagattgtaatttcctcagttatcaatggcaaccaattaagtgaatgtg |
281 |
Q |
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| T |
19023649 |
aaataaaagtattgcattcaattctttaaaaatta---catcaattactgagcgattgcaatttccacaattatcaatggaaaccaattaagtcaatttg |
19023553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 10525510 - 10525564
Alignment:
| Q |
38 |
tcgtcgatatttaattgacatttcaaaggttatgaaaatagatgagaggctacta |
92 |
Q |
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| T |
10525510 |
tcgttgatatttagttgacatttcaaatgttatgaaaatggatgataagctacta |
10525564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 40818 - 40749
Alignment:
| Q |
91 |
taggctaaacttatgacgagtt-agtgttagcctacgcgtcagtcacgaccaa-aaattgggtcgtgaca |
158 |
Q |
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| T |
40818 |
taggctaaaattatgatgagtttagtgttagcctacgcgtcagccaatgccaacaaattgggtcgtgaca |
40749 |
T |
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