View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_58 (Length: 363)
Name: NF19757_low_58
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_58 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 34436902 - 34437230
Alignment:
| Q |
15 |
cacagacgaggacactaaaataaaatacgtcactgatggatcttacatacaaacaggagttaacaaaaacatttcttcagactatgcatacccaaaaaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34436902 |
cacagacgaggacactaaaataaaatacgtcactgatggatcttacatacaaacaggagttaacaaaaacatttcttctgactatgcatacccaaaaaat |
34437001 |
T |
|
| Q |
115 |
cctaatctaccatatccactctcagatctcagaagttttcctcatggaaaccggaactgttaccgattatttgccggaacaaaaggcagtttacatttaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34437002 |
cctaatctaccatatccactctcagatctcagaagttttcctcatggaaaccggaactgttaccgattaattgccggaacaaaaggcagtttacatttaa |
34437101 |
T |
|
| Q |
215 |
taagagcttctttcttgtatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttctggtcatcagtgaaatttaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437102 |
taagagcttctttcttgtatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttctggtcatcagtgaaatttaa |
34437201 |
T |
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| Q |
315 |
gaatgcttcagaacaagttgcattggaaa |
343 |
Q |
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| T |
34437202 |
gaatgcttcagaacaagttgcattggaaa |
34437230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 32 - 347
Target Start/End: Original strand, 34443666 - 34443981
Alignment:
| Q |
32 |
aaataaaatacgtcactgatggatcttacatacaaacaggagttaacaaaaacatttcttcagactatgcatacccaaaaaatcctaatctaccatatcc |
131 |
Q |
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|||||||||||| ||| |||||| ||||||||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||||||||||||| | |
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| T |
34443666 |
aaataaaatacggcacagatggagcttacatacaaacaggacttaacagaaacatttctgctaactatgcatacccaaaaaatcctaatctaccatatac |
34443765 |
T |
|
| Q |
132 |
actctcagatctcagaagttttcctcatggaaaccggaactgttaccgattatttgccggaacaaaaggcagtttacatttaataagagcttctttcttg |
231 |
Q |
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| T |
34443766 |
attctcagatctcagaagttttcctcaaggaaaccgaaactgttaccgattaattgccggaagaaatggcagtttacatttaataagagcttctttcttg |
34443865 |
T |
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| Q |
232 |
tatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttctggtcatcagtgaaatttaagaatgcttcagaacaag |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| || |
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| T |
34443866 |
tatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttatggtcaacagttaaatttaagaatgcttcagaaggag |
34443965 |
T |
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| Q |
332 |
ttgcattggaaataat |
347 |
Q |
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|| ||||||||||||| |
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| T |
34443966 |
ttacattggaaataat |
34443981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 21440383 - 21440347
Alignment:
| Q |
209 |
atttaataagagcttctttcttgtatggaaactatga |
245 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
21440383 |
atttaataagagcttctttctattatggaaactatga |
21440347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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