View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_59 (Length: 360)
Name: NF19757_low_59
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 2 - 344
Target Start/End: Original strand, 27946009 - 27946349
Alignment:
| Q |
2 |
ctatgttagaatgttcactcttccttgcagtcagaccttagtattttgtgtgaattattatttgaatacatataagaaatttaagatttgg--tgtcaaa |
99 |
Q |
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| T |
27946009 |
ctatgttagaatgttcactcttccttgcagtcagaccttagtattttgtgtgaattattatttgaatacagataagaaatttaagatttggagtgttaaa |
27946108 |
T |
|
| Q |
100 |
gtcccaatcacacacgagatagcttcccttcatatataggcaggtgcacaataacaatgacttagaattaaggttaatcaatcccttgaataacacatcc |
199 |
Q |
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| T |
27946109 |
gtcccaatcatacacgagatagcttcccttcata----ggcaggtgcacaataacaatgacttagaattaaggttaatcaatcccttgaataacacatcc |
27946204 |
T |
|
| Q |
200 |
tgattctatatcaaaagcttatgttttcctacctttgatgcatggtttatctatagtccatgactgtatcttttctactttctatgttttgtttactgaa |
299 |
Q |
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| T |
27946205 |
tcattctatatcaaaagcttatgttttcctacctttgatgcatggtttatctatagtccatgactgtatcttttctactttctatgttttgtttactgaa |
27946304 |
T |
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| Q |
300 |
attttagatatacctctaaatttccaaaattcattgatcagtttg |
344 |
Q |
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| T |
27946305 |
attttagatatacctctaaatttccaaaattcattgatcagtttg |
27946349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 135 - 344
Target Start/End: Original strand, 27437779 - 27437986
Alignment:
| Q |
135 |
ataggcaggtgcacaataacaatgacttagaattaaggttaatcaatcccttgaataacacatcctgattctatatcaaaagcttatgttttcctacctt |
234 |
Q |
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| T |
27437779 |
ataggcaagtgcacaataacaatgacttagaattgaggttagttaatcccttgaataacacattctcagtctacagcaaaaactt--gttttgctacctt |
27437876 |
T |
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| Q |
235 |
tgatgcatggtttatctatagtccatgactgtatcttttctactttctatgttttgtttactgaaattttagatatacctctaaatttccaaaattcatt |
334 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27437877 |
tgatgcatggtttatctgtagtccatgactgtatcttttctactctctaagttttgtttactgaaattttagatatacctctaaatttccaaaatttatt |
27437976 |
T |
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| Q |
335 |
gatcagtttg |
344 |
Q |
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|||||||||| |
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| T |
27437977 |
gatcagtttg |
27437986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 344
Target Start/End: Complemental strand, 27548540 - 27548401
Alignment:
| Q |
219 |
tatgttttcctacctttgatgcatggtttat----ctatagtccatgac--tgtatcttttctactttctatgttttgtttactgaaattttagata--- |
309 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||| |||||| |||| |||||||||||| |
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| T |
27548540 |
tatgttttcctacctttgaagcatggtttatctatctatagtccatgactgtgtatcttttctactctctaacttttgtctactcaaattttagatatat |
27548441 |
T |
|
| Q |
310 |
-----tacctctaaatttccaaaattcattgatcagtttg |
344 |
Q |
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|| |||||||||||||||||||||||||||||||| |
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| T |
27548440 |
acctctaactctaaatttccaaaattcattgatcagtttg |
27548401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 27548631 - 27548583
Alignment:
| Q |
36 |
accttagtattttgtgtgaattattatttgaatacatataagaaattta |
84 |
Q |
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||||||||||||||||||||||||||||| ||| || |||||||||||| |
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| T |
27548631 |
accttagtattttgtgtgaattattattttaatgcagataagaaattta |
27548583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 27437520 - 27437557
Alignment:
| Q |
3 |
tatgttagaatgttcactcttccttgcagtcagacctt |
40 |
Q |
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||||||| ||| |||||||||||||||||||||||||| |
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| T |
27437520 |
tatgttaaaattttcactcttccttgcagtcagacctt |
27437557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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