View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_60 (Length: 358)
Name: NF19757_low_60
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 12560407 - 12560720
Alignment:
| Q |
20 |
gcaggctcttagataagtgcaggaggatttgttagggaacatattcattagaaactagcaactacttttcccgtttctactttgagtttcctatttgaaa |
119 |
Q |
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| T |
12560407 |
gcaggctgttagataagtgcaggaggatttgttagggaacatattcattagaaacta-------cttttcccatctctactttgagtttcctatttgaaa |
12560499 |
T |
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| Q |
120 |
agagttgtaaatcatataaaaaatatcatttaatttttgcaggcgggattatcatacgcgaatgtgtttctatttctatatcgcataatgttgcaagagg |
219 |
Q |
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| T |
12560500 |
agagttgtaaatcatataaaaaatatcatttaatttttgcaggcgg-attatcatacacgaat-tgtttctatttctatatcgcataatgttgcaagagg |
12560597 |
T |
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| Q |
220 |
gattgtattacaatgtactattacaatcattatgcaatagtcttatagaattataaaggtatctagaagaagtttaaaatagaatgtaataggaaaaaag |
319 |
Q |
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| T |
12560598 |
gattgtattacaatgtactatgacaatcattatgcaatagtcttgtagaattataaaggtatct---agaagtttaaaatagaatgtaataggaaaaaag |
12560694 |
T |
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| Q |
320 |
tgtgaatggtttatataaaatgtaat |
345 |
Q |
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| T |
12560695 |
tgtgaatggtttatataaaatgtaat |
12560720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 79 - 317
Target Start/End: Original strand, 12557251 - 12557501
Alignment:
| Q |
79 |
aactacttttcccgtttctactttgagtttcctatttgaaaagagttgtaaatcatataaaaaatatcatttaatttttgcaggcgggattatcatacgc |
178 |
Q |
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| T |
12557251 |
aactacttttccagtctctactttgagtttcctatttgaaaagagttgtaaataatataaaaaatatcatttaatttttgca-accggattatcatacgt |
12557349 |
T |
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| Q |
179 |
gaatgtgtttctatttctatatcgcataatgttgcaagagggattg-------------tattacaatgtactattacaatcattatgcaatagtcttat |
265 |
Q |
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| T |
12557350 |
gaatgtgtttctatttctacatcgcataatattgcaagagggattggcaagagacgtaatattacaatgtactatgacaatcattatgcaatatgcttat |
12557449 |
T |
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| Q |
266 |
agaattataaaggtatctagaagaagtttaaaatagaatgtaataggaaaaa |
317 |
Q |
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| T |
12557450 |
agaattacaaaggtgtctaaaagaaatttgaaacaaaatataattggaaaaa |
12557501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 331
Target Start/End: Complemental strand, 9291338 - 9291232
Alignment:
| Q |
225 |
tattacaatgtactattacaatcattatgcaatagtcttatagaattataaaggtatctagaagaagtttaaaatagaatgtaataggaaaaaagtgtga |
324 |
Q |
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| T |
9291338 |
tattacaatgtacgatgacaatcattatgcaataggcttatagaattataaaggtctccagaagaaattttaaacagaaaataattggaagacagtgtgc |
9291239 |
T |
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| Q |
325 |
atggttt |
331 |
Q |
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| T |
9291238 |
atggttt |
9291232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 12558328 - 12558418
Alignment:
| Q |
255 |
aatagtcttatagaattataaaggtatctagaagaagtttaaaatagaatgtaa-----taggaaaaaagtgtgaatggtttatataaaat |
340 |
Q |
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| T |
12558328 |
aataggcttatagaattataaaggtctctagaaaaaatttaaaacagaatgtaaattggaagaaaaaaagtgtggatggtttataaaaaat |
12558418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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