View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_64 (Length: 339)
Name: NF19757_low_64
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 40113931 - 40113610
Alignment:
| Q |
1 |
tttactttattatgaagtatgaaacatgtgaatataggtgaggataccaaaccaaaccatatgaagcaatcttttgtaatattatagacgttggttatgt |
100 |
Q |
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| T |
40113931 |
tttactttattatgaagtatgaaacatgtgaatataggtgaggataccaaaccaaaccatatgaagcaattttttgtaatattatagacgttggttatgt |
40113832 |
T |
|
| Q |
101 |
atgataagaagtaccttagaagatggatcttgtgtttcaacaaaggctctcacaagacggattttggttagttcagtttctgtgacaacatcatttgcaa |
200 |
Q |
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| T |
40113831 |
atgataagaagtaccttagaagatggatcttgtgtttcaacaaaggctctcacaagacggattttggttagttcagtttctgtgacaacatcatttgcaa |
40113732 |
T |
|
| Q |
201 |
ctacttgtgcttttgcttctaattccttatgacaacccttcactgcttccattttcagttgacccttttcttcgcctttgtcctcttgatcaaagtgaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40113731 |
ctacttgtgcttttgcttctaattccttatgacaacccttcactgcttccattttcagttgacccttttcttcgtctttgtcctcttgatcaaagtgaag |
40113632 |
T |
|
| Q |
301 |
cttcttttctagtactactatg |
322 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
40113631 |
cttcttttctagtactgctatg |
40113610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 40121083 - 40120994
Alignment:
| Q |
110 |
agtaccttagaagatggatcttgtgtttcaacaaaggctctcacaagacggattttggttagttcagtttctgtgacaacatcatttgca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
40121083 |
agtaccttagaagatggatcttgtgtttcaacaaagggtcgcacaagacggattttggttagttcagtttctgtaacagcatcatttgca |
40120994 |
T |
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