View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_68 (Length: 334)
Name: NF19757_low_68
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 4 - 319
Target Start/End: Original strand, 29039571 - 29039886
Alignment:
| Q |
4 |
atctcaaacatacttgtatttgttgtatccactgaagtcttgtttttccctctgttatcggtcctcagttttccggtcagcgactgctctttttctgaaa |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29039571 |
atctcaaacatacttgtatttgttgtatccactgaagtcttgtttttccctctgttatcggtcctcagttttctggtcagcgactgctctttttctgaaa |
29039670 |
T |
|
| Q |
104 |
aatctatgaaatcctgcacaacgctctgcactccatttgaggaaattgtagaattcattctttcacgtccatgattaacatctgacgtcggtttcacatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29039671 |
aatctatgaaatcctgcacaacgctctgcactccatttgaggaaattgtagaattcattctttcacgtccatgattaacatctgacgtcggtttcacatt |
29039770 |
T |
|
| Q |
204 |
cttaatcagatctgcatcaccaagtgtaccttctggatgaccaatatcaggggaggatagtaaaggtgaagtaattgttgactggttctggtcagcagga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29039771 |
cttaatcagatctgcatcaccaagtgtaccttctggatgaccaatatcagaggaggatagtaaaggtgaagtaattgttgactggttctggtcagcagga |
29039870 |
T |
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| Q |
304 |
tcagtggtagaatatt |
319 |
Q |
| |
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|||||||||||||||| |
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| T |
29039871 |
tcagtggtagaatatt |
29039886 |
T |
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