View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_69 (Length: 331)
Name: NF19757_low_69
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 42475454 - 42475769
Alignment:
| Q |
1 |
atttttataatgcattaaaagctcagtgctgaaccgatatatgattgctaaatgattatttagctgtttgttaaacatgttgcctgtttgatcatttgtt |
100 |
Q |
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| T |
42475454 |
atttttataatgcattaaaagctcagtgctgaaccgatatatgattgctaaatgattatttagctgtttgttaaacatgttgcctgtttgatcatttgtt |
42475553 |
T |
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| Q |
101 |
tgataaatatgttgatgatcatttattcatttatatcttattttcaaatgaggattggggaaattgatcttggttttgtcaaattgaaatagacatttga |
200 |
Q |
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| T |
42475554 |
tgataaatatgttgatgatcatttattcatttatatcttattttcaaatgaggattggggaaattgatcttggttttgtcaaattgaaatagacatttga |
42475653 |
T |
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| Q |
201 |
gcattgtaaaattttctctgctttgtcatatatggaggaagatcattgttgaacaagatatctatgtttgaatgcagcattttgattcagcaagtggata |
300 |
Q |
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| T |
42475654 |
gcattgtaaaattttctctgctttgtcgtatatggaggaagatcattgttgaacaagatatctatgtttgaatgcagcattttgattcagcaagtggata |
42475753 |
T |
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| Q |
301 |
tttcatctcacaggtt |
316 |
Q |
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| T |
42475754 |
tttcatctcacaggtt |
42475769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 42468267 - 42468353
Alignment:
| Q |
229 |
tatatggaggaagatcattgttgaacaagatatctatgtttgaatgcagcattttgattcagcaagtggatatttcatctcacaggtt |
316 |
Q |
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| T |
42468267 |
tatatggagaaagatcattgtctaacaagatatctatatttgaatgcagcattttgattc-gtaagtggatatttcatctcacaggtt |
42468353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 176
Target Start/End: Original strand, 42480885 - 42481016
Alignment:
| Q |
38 |
tatatgattgctaaatgattatttagctgtttgttaaacatgttgcctgtttgatc-atttgtttgataaatatgttgatgatcatttattcatttatat |
136 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| | | ||| ||| ||| |||||| ||||| |||||||| |
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| T |
42480885 |
tatatgattgctaaatcgttatttagctgtttgttaaacatgttgcctgtttgatcaaatggttggatcaatctgttga-------ttatt-atttatat |
42480976 |
T |
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| Q |
137 |
cttattttcaaatgaggattggggaaattgatcttggttt |
176 |
Q |
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| T |
42480977 |
cttattttcaaatgagggcttgggaaattgatctttgttt |
42481016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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