View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19757_low_70 (Length: 323)
Name: NF19757_low_70
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_70 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 6310187 - 6309882
Alignment:
| Q |
1 |
actcatagagtggtgataatgtttgaagctagaactacaagaatatgatgactccaattgttattgcaaattccaaatattaatcgaacagaagagtgat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
6310187 |
actcatagagtggtgataatttttgaagctagaactacaagaatatgatgactccaattgttattggaaattccaaatattaaccgaacataagagtgat |
6310088 |
T |
|
| Q |
101 |
caattgagacgtttaaaattgagctaagccaactacaatggttcatgcgaaccttgcactgaagaaggaaagccattagatataaaatagagtaaggcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310087 |
caattgagacgtttaaaattgagctaagccaactacaatggttcatgcgaaccttgcactgaagaaggaaagccattagatataaaatagagtaaggcaa |
6309988 |
T |
|
| Q |
201 |
cagtagcagtaaatgaagaaggaaagttgcatgttacaattgccaagccataaaagtatacatccaaaattaacacataattaactgtgttaaccctaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
6309987 |
cagtagcagtaaatgaagaaggaaagttgaatgttacaattgccaagccaaaaaagtatacatccaaaattaacatataattaactgtgttaaccccaag |
6309888 |
T |
|
| Q |
301 |
ggaggt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
6309887 |
ggaggt |
6309882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University