View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19757_low_72 (Length: 318)

Name: NF19757_low_72
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19757_low_72
NF19757_low_72
[»] chr6 (1 HSPs)
chr6 (15-303)||(15912983-15913271)
[»] chr1 (6 HSPs)
chr1 (23-137)||(9358841-9358955)
chr1 (156-261)||(9335311-9335416)
chr1 (23-137)||(9335124-9335235)
chr1 (156-257)||(9245313-9245414)
chr1 (156-257)||(9359037-9359138)
chr1 (39-132)||(9245456-9245555)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 15913271 - 15912983
Alignment:
Q  15 gaatatcctcctcgtatgaaaggggtcgatctggtacaccttctctaacactgacactatgaaaatctgaggatgacatagctacaagcatcactttgca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15913271 gaatatcctcctcgtatgaaaggggtcgatctggtacaccttctctaacactgacactatgaaaatctgaggatgacatagctacaagcatcactttgca 15913172  T
Q  115 ataatcttttaatttcccaactgtcaagtatcccccggaataagcgtaaacatggcttttggagtccgagctgatgcagggagtggtatcgacgtactca 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  15913171 ataatcttttaatttcccaactgtcaagtatcccccggcataagcgtaaacatggcttttggagtccgagctgatgcagggagcggtatccacgtactca 15913072  T
Q  215 ggatcattattcactgatttgctacacttcaagtatattatgtacccaggcggagattgggtttgatatggttcgccgtcgttgatact 303  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||    
T  15913071 ggatcatcattcactgatttgctacacttcaagtatattatgtacccaggcagataattggtttgatatggttcgccgtcgttgatact 15912983  T

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Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 9358841 - 9358955
Alignment:
Q  23 tcctcgtatgaaaggggtcgatctggtacaccttctctaacactgacactatgaaaatctgaggatgacatagctacaagcatcactttgcaataatctt 122  Q
    |||| ||||||||| | ||||||||||||||||||||| || |||||| || |||||||||| ||||||||||| |||||| |||||| |||||||||||    
T  9358841 tcctggtatgaaagtgatcgatctggtacaccttctctgactctgacattaggaaaatctgaagatgacatagcaacaagcttcacttggcaataatctt 9358940  T
Q  123 ttaatttcccaactg 137  Q
    ||||| |||||||||    
T  9358941 ttaatctcccaactg 9358955  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 9335311 - 9335416
Alignment:
Q  156 aagcgtaaacatggcttttggagtccgagctgatgcagggagtggtatcgacgtactcaggatcattattcactgatttgctacacttcaagtatattat 255  Q
    |||| |||| || |||||||||||| ||||||||||||||||  ||||| || ||||||| ||||| |||||||  ||||||||||||||||||||||||    
T  9335311 aagcataaagatagcttttggagtcggagctgatgcagggagctgtatccacatactcagtatcatcattcacttgtttgctacacttcaagtatattat 9335410  T
Q  256 gtaccc 261  Q
    ||||||    
T  9335411 gtaccc 9335416  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 9335124 - 9335235
Alignment:
Q  23 tcctcgtatgaaaggggtcgatctggtacaccttctctaacactgacactatgaaaatctgaggatgacatagctacaagcatcactttgcaataatctt 122  Q
    |||| ||||||||| | ||||||||||||||||||||| || |||||| || ||||||   | ||||||||||| |||||| |||||| |||||||||||    
T  9335124 tcctggtatgaaagtgatcgatctggtacaccttctctgactctgacattaggaaaat---aagatgacatagcaacaagcttcacttggcaataatctt 9335220  T
Q  123 ttaatttcccaactg 137  Q
    ||||| |||||||||    
T  9335221 ttaatctcccaactg 9335235  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 9245414 - 9245313
Alignment:
Q  156 aagcgtaaacatggcttttggagtccgagctgatgcagggagtggtatcgacgtactcaggatcattattcactgatttgctacacttcaagtatattat 255  Q
    |||| |||| || |||||||||||| ||| |||| |||||||  ||||| || ||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  9245414 aagcataaagatagcttttggagtcggagttgatacagggagctgtatccacatactcaggatcatcattcactgctttgctacatttcaagtatattat 9245315  T
Q  256 gt 257  Q
    ||    
T  9245314 gt 9245313  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 9359037 - 9359138
Alignment:
Q  156 aagcgtaaacatggcttttggagtccgagctgatgcagggagtggtatcgacgtactcaggatcattattcactgatttgctacacttcaagtatattat 255  Q
    |||| |||| || ||||| |||||| ||| |||| |||||||  ||||| || ||||||||||||| |||||||  ||||||||| ||||||||||||||    
T  9359037 aagcataaagatagctttcggagtcggagttgatacagggagctgtatccacatactcaggatcatcattcacttgtttgctacaattcaagtatattat 9359136  T
Q  256 gt 257  Q
    ||    
T  9359137 gt 9359138  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 9245555 - 9245456
Alignment:
Q  39 gtcgatctggtacaccttctctaac------actgacactatgaaaatctgaggatgacatagctacaagcatcactttgcaataatcttttaatttccc 132  Q
    |||||||||||||||||||||| ||      |||| ||||| |||||||||| ||||||||||| |||||| |||||| |||||| ||||||||| ||||    
T  9245555 gtcgatctggtacaccttctctgaccttggcactgtcactaggaaaatctgaagatgacatagcaacaagcttcacttggcaatagtcttttaatctccc 9245456  T

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