View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_73 (Length: 317)
Name: NF19757_low_73
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_73 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 8167510 - 8167816
Alignment:
| Q |
1 |
gtgaagtgatgatcattgcagtttttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcgggg |
100 |
Q |
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| T |
8167510 |
gtgaagtgatgatcattgcagtttttgcattgcataggatagatagttctgtaactttgttgaagagccctagtttgcgttttgagaaggtatcgagggg |
8167609 |
T |
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| Q |
101 |
cttgtttgattgttctgctttcttgattttaatggtt---ctcttacgtttgttgttgctttttgttgatgtgttgtttccgtctgaagaagccattgga |
197 |
Q |
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| T |
8167610 |
cttgtttgattgttctgctttcttgattttaatggttgatctcttacgtttgttgttgctttttgttgatgtgttgtttccgtttgaagaagccattgga |
8167709 |
T |
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| Q |
198 |
tctttcttccaagaggagaaagagggaagaaagaactcaataaccaaatatgaaagaaaactttgttttgttcccaaaatatggaactgactctttcttt |
297 |
Q |
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| T |
8167710 |
tctttcttccaagaggagaaagagggaagaaagaactcaataaccaaatatgaaagaaaactttgttttggtcccaaaatatggaaccgactctttcttt |
8167809 |
T |
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| Q |
298 |
tttagaa |
304 |
Q |
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| T |
8167810 |
tatagaa |
8167816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 178
Target Start/End: Original strand, 8999198 - 8999351
Alignment:
| Q |
25 |
ttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttctt |
124 |
Q |
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| T |
8999198 |
ttgcattgcataaaatgaatagttatgtgactttgttgaagagtcctaatttgcgttttgagaaggtatcatccagcttgttagattcttctactttctt |
8999297 |
T |
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| Q |
125 |
gattttaatggttctcttacgtttgttgttgctttttgttgatgtgttgtttcc |
178 |
Q |
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| T |
8999298 |
aatttcattgattctcttaggtgtgtcgttgtgttttgttaatatgatgtttcc |
8999351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 50707577 - 50707789
Alignment:
| Q |
1 |
gtgaagtgatgatcattgcagtttttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcgggg |
100 |
Q |
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||||||||||||||| ||| |||||||||||||| ||||| |||| |||||| ||||| |||||||| ||||||||||| ||||| |||| ||| || | |
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| T |
50707577 |
gtgaagtgatgatcagtgcggtttttgcattgcatagaatggataattctgttactttgttgaagagtcctagtttgcgctttgaaaaggtatcacgccg |
50707676 |
T |
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| Q |
101 |
cttgtttgattgttctgctttcttgattttaatggttctcttacgtttgttgttgctttttgttgatgtgttgtttccgtctg-aagaagccattggatc |
199 |
Q |
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| T |
50707677 |
cttgttcgatggctttgctttcttgatttcaatggttttcttccgtgagttgcttcgttttgttgacgtgttgtttccatccgtaagaagccattgaatc |
50707776 |
T |
|
| Q |
200 |
tttcttccaagag |
212 |
Q |
| |
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| T |
50707777 |
tttcttccaagag |
50707789 |
T |
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