View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_77 (Length: 315)
Name: NF19757_low_77
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 2687620 - 2687900
Alignment:
| Q |
19 |
caactctcatcatcttcttaattttaatcagtcacttttagtataacctggtctccannnnnnnaaccaacttagcctaccagttttcaattgcagtgaa |
118 |
Q |
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| T |
2687620 |
caactctcttcatcttcttaattttaatcagtcacttttagtataacttggtctccatttttttaaccaacttagcctaccaattttcaattgcagtgaa |
2687719 |
T |
|
| Q |
119 |
agtaacccattagatttacaagaatttatcttttcttttgaaacggcaaaatttattaagaccgaaactcttgcaagacgcaaagagatggaaaagaaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |
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| T |
2687720 |
agtaacccattagatttacaagaatttatcttttcttttgaaacggcaaaatttattaagaccgaaactcttacaagacgcaaagagacggaaaaaaaag |
2687819 |
T |
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| Q |
219 |
caatacaaagatgccgtatataggcgtaacatccaccccgcaaacacaagtttgcctcaaccgaaaatgatacaacaaaac |
299 |
Q |
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| T |
2687820 |
caatacaaagatgccgtatataggcgtaacatccaccatgcaaacacaagtttgcctcaaccgaaaatgatacaacaaaac |
2687900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 19109461 - 19109554
Alignment:
| Q |
154 |
ttttgaaacggcaaaatttattaagaccgaaactcttgcaagacgcaaagagatggaaaagaaagcaatacaaagatgccgtatataggcgtaacatc |
251 |
Q |
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| T |
19109461 |
ttttgaaacggcaaatattattgaaaccgaaactctcgcaagacgcaaagaggcggagaaaa----aatacaaggatgccacatataggcgtaacatc |
19109554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 20795085 - 20794979
Alignment:
| Q |
149 |
ttttcttttgaaacggcaaaatttattaagaccgaaactcttgcaagacgcaaagagatgg-aaaagaaagcaatacaaagatgccgtatataggcgtaa |
247 |
Q |
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|||| |||| || |||||||||||| |||| ||||| |||| |||||| |||||||| ||| ||||| || ||||||||| |||||| ||||||| ||| |
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| T |
20795085 |
ttttttttttaatcggcaaaatttactaag-ccgaagctctcgcaagatgcaaagaggtggcaaaaggaa-caatacaaaaatgccgcctataggcataa |
20794988 |
T |
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| Q |
248 |
catccaccc |
256 |
Q |
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| T |
20794987 |
catccaccc |
20794979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 18055104 - 18055071
Alignment:
| Q |
222 |
tacaaagatgccgtatataggcgtaacatccacc |
255 |
Q |
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| T |
18055104 |
tacaaagatgccgcatataggcgtaacatccacc |
18055071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 27220903 - 27220870
Alignment:
| Q |
223 |
acaaagatgccgtatataggcgtaacatccaccc |
256 |
Q |
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| T |
27220903 |
acaaagatgccgcatataggcgtaacatccaccc |
27220870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 19535983 - 19535931
Alignment:
| Q |
154 |
ttttgaaacggcaaaatttattaagaccgaaactctt-gcaagacgcaaagag |
205 |
Q |
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||||||||||||||| ||||| | |||||||||||| ||||||||||||||| |
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| T |
19535983 |
ttttgaaacggcaaatattattgaaaccgaaactcttcgcaagacgcaaagag |
19535931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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