View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_78 (Length: 314)
Name: NF19757_low_78
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_78 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 23598015 - 23598321
Alignment:
| Q |
13 |
atttcaatgtacttttcccttta----atgttaacaatggtttatgttcctgttcttcatttttcttgttttgacttttgataaattgatcatggattca |
108 |
Q |
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| T |
23598015 |
atttcaatgtacttttccctttatttaatgttaacaatggtttaagttcctgttcttcatttttcttgttttgacttttgataaattgatcatggattca |
23598114 |
T |
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| Q |
109 |
aattcgtgttt-atctttctaagttgggtagtttttgttaggattataatcggttaagaaatttgaagtgaatagacttcttcaattttggttttggttt |
207 |
Q |
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| T |
23598115 |
aattcgtgttttatctttctaagttgggtagtttttgttaggattataatcagttaagaaatttgaagtgaatagacttcttcaattttggttttggttt |
23598214 |
T |
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| Q |
208 |
ggcttttaaaactgtagcaggttggtgttcgagggcatactagaaaaagattaaaaaatggctcaattgactttgttggttttggtttggcttttgaaac |
307 |
Q |
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| T |
23598215 |
ggcttttaaaactgtagcaggttggtgttcgagggcatactagaaaaagattaaaaaatggctcaattgactttgttggttttggtttggcttttgaaac |
23598314 |
T |
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| Q |
308 |
tgtatca |
314 |
Q |
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| T |
23598315 |
tgtatca |
23598321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 23598290 - 23598328
Alignment:
| Q |
195 |
ttggttttggtttggcttttaaaactgtagcaggttggt |
233 |
Q |
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| T |
23598290 |
ttggttttggtttggcttttgaaactgtatcaggttggt |
23598328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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