View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_79 (Length: 310)
Name: NF19757_low_79
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 29039203 - 29039504
Alignment:
| Q |
1 |
aaaagtttcatattttcttatattgctggtacatgtttgaatgtaaacatgaataatttcagtaagaaactagggaacagttcctctcccgtgaccgtga |
100 |
Q |
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| T |
29039203 |
aaaagtttcatattttcttatattgttggtacatgtttgaatgtaaacatgaataatttcagtaagaaactagggaacagttcctctcccgtgaccgtga |
29039302 |
T |
|
| Q |
101 |
aaattgcattgaagggattctagtggaaatcttcatcgttcaatcaagtcttagt--ctcatcgactttgaccacatgcagtagagataaatgagcggtt |
198 |
Q |
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| T |
29039303 |
aaattgcattggagggattctagtggaaatcttcatcgttcaatcaaatcttcatcgctcatcgactttgaccgcatgcagtagagataaataagcggtg |
29039402 |
T |
|
| Q |
199 |
gaaattctactgcagaaaatttccaccggagagaacccgttcccaactaagagacagttatgcaggttttatgattctaatgctcagctaagtatcccta |
298 |
Q |
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| T |
29039403 |
gaaattctactgcagaaaatttccaccggagagaacccgttcccaactaagagacagttatgcaggttttatgattctaatgctcagctaagtatcccta |
29039502 |
T |
|
| Q |
299 |
tg |
300 |
Q |
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|| |
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| T |
29039503 |
tg |
29039504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 29096826 - 29096738
Alignment:
| Q |
14 |
tttcttatattgctggtacatgtttgaatgtaaacatgaataatttcagtaagaaactagggaacagttcctctcccgtgaccgtgaaaa |
103 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||| ||| | |||||| |
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| T |
29096826 |
tttcttatattgttggtacatgaatgaatgtaaacatgaat-agctcagtaagaaactagggaacaattcctctcccttgaacatgaaaa |
29096738 |
T |
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